View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_1 (Length: 934)
Name: NF16093_low_1
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 478
Target Start/End: Complemental strand, 10306864 - 10306411
Alignment:
| Q |
16 |
tagggagagcgcggaggaggtcagtggtgctgaacgcggtaaggcaaactgcacagttggcggtggcggtagcggtggtggaaatggaggagaaatgaaa |
115 |
Q |
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| T |
10306864 |
tagggagagcgcggaggaggtcagtggtgctgaacgcggtaaggcaaactgcacagtcggcagtggcggtagcggtcgtggaaatggaggagaaatgaaa |
10306765 |
T |
|
| Q |
116 |
cgtaggaagtgaatcgattgctcgttgtatttcccgcgccggtggaggtggttgcgacggcggtggtgttgaatcggaggtgaaatggaaaggaatcgga |
215 |
Q |
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| T |
10306764 |
cgtaggaagtgaatcgattgctcgttgtatttccggcgcaggttgaggtggttgcgacgacggtggtgttgaatcggaggtgaaatggaacggaatcgga |
10306665 |
T |
|
| Q |
216 |
gggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatcatcgtcaatggtggcggtggttgtggtgatcgcggtggtgttgaatcggaga |
315 |
Q |
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| T |
10306664 |
gggagtgagtcgatgtttagtgaagctggaggcgactcagtaacaatcgtcgtcaatggtg---------gtggtgatcgcggtggtgttgaatcggaga |
10306574 |
T |
|
| Q |
316 |
ggagacgtcggcgatttatgcggatttgaaggaaacggagcatgagtgaaagcatgaaggtgatgaagagaatagcgagaatgatgagaatggtggagaa |
415 |
Q |
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| T |
10306573 |
ggagacgtcggcgatttatgcggagttgaaggaaacggagcatgagtgaaagcatgaaggtgatgaagagaatagcgagaatgatgagaatggtggagaa |
10306474 |
T |
|
| Q |
416 |
tactgaatccatggagagaaaaacgaaagaggttagagagagagaagtgatggtggaatgaga |
478 |
Q |
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| T |
10306473 |
tactgaatccatggagagaaaaacgaaagaggttagagagagagaagtgatggtggaatgaga |
10306411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 502 - 920
Target Start/End: Complemental strand, 10306414 - 10305996
Alignment:
| Q |
502 |
gagaacagtgatacatagtgagtgttgttgttttgcaatgacagtgttgcattgttctaagttgtaacagaaatatataagtcacc-tttgcctcatgcg |
600 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
10306414 |
gagaacaatgatacatagtgagtgttgttgttttgcaatgacagtgttgcattgttctaagttgtaacagaaatatg--agtcaccctttgcctcatgcg |
10306317 |
T |
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| Q |
601 |
tgtggttggttttggtgtggatgagagcatttttgtatcttctgatttcattttgtaaacggagtatcaatcttcaatataatt-aatattcatatagta |
699 |
Q |
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| T |
10306316 |
tgtggttggttttggtgtgaatgagagcatttttgtatcttctgatttcattttgtaaacggagtattaatcttcaatataatttaatattcatatagta |
10306217 |
T |
|
| Q |
700 |
caaaaatgtaaatgcagtagtggtaatgttagtatttcacagtaatcggttattgtccttcgtcttctatgtttcatgaaacctctcaggtgtatagtgg |
799 |
Q |
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| T |
10306216 |
caaaaatgtaaatacagtagtactaatgttagtattttacagtaatcggttattgtccttcgtcttctatgtttcatgaaatctctcaggtgtatagtgg |
10306117 |
T |
|
| Q |
800 |
ttggaaatttattccattggagtaacatctctagcctcttaaaaggaccaaaccttgcattgttttataataatttggttttggtgatgatttttagatg |
899 |
Q |
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| T |
10306116 |
ttggaaatttattccattggagtaacatctctagcctcttaaaaggaccaaacctcgcattgttttataataatttggttttggtgatgatttttagatg |
10306017 |
T |
|
| Q |
900 |
gcagcagctattgctgaggat |
920 |
Q |
| |
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||||||||||||| ||||||| |
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| T |
10306016 |
gcagcagctattggtgaggat |
10305996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 785 - 818
Target Start/End: Complemental strand, 1067198 - 1067165
Alignment:
| Q |
785 |
tcaggtgtatagtggttggaaatttattccattg |
818 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
1067198 |
tcagatgtatagtggttggaaatttattccattg |
1067165 |
T |
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