View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16093_low_10 (Length: 491)

Name: NF16093_low_10
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16093_low_10
NF16093_low_10
[»] chr1 (2 HSPs)
chr1 (133-481)||(41815763-41816110)
chr1 (19-97)||(41816141-41816219)
[»] chr2 (4 HSPs)
chr2 (245-305)||(10455113-10455173)
chr2 (238-305)||(519036-519103)
chr2 (238-305)||(21153219-21153286)
chr2 (248-305)||(24460133-24460190)
[»] chr8 (1 HSPs)
chr8 (238-305)||(39069569-39069636)
[»] chr3 (3 HSPs)
chr3 (238-305)||(54409976-54410043)
chr3 (238-305)||(55135919-55135986)
chr3 (238-305)||(32000548-32000615)
[»] chr5 (1 HSPs)
chr5 (238-305)||(6720155-6720222)
[»] chr4 (1 HSPs)
chr4 (238-305)||(47650129-47650201)


Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 133 - 481
Target Start/End: Complemental strand, 41816110 - 41815763
Alignment:
Q  133 tgtgtttcttgttttctctaaaatttgatgataacaatggtgtttgcagcgagaaggatgcacaaatgtgtatatatcatgtttcatggaaaaccaattt 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816110 tgtgtttcttgttttctctaaaatttgatgataacaatggtgtttgcagcgagaaggatgcacaaatgtgtatatatcatgtttcatggaaaaccaattt 41816011  T
Q  233 tgggttttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaacctttgtttcaaagtttgaattaaacatgttt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816010 tgggttttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaacctttgtttcaaagtttgaattaaacatgttt 41815911  T
Q  333 aatgaaatttgaaatgcttgttgtgaacttgtgattgtggtgcaggtgtgcctggtgtcttgtctgttcagccagatgacaattttgagtctgaaaataa 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  41815910 aatgaaatttgaaatgcttgttgtgaacttgtgattgtggtgcaggtgtgcctggggtcttgtctgttcagccagatgacaattttgagtctgaaaataa 41815811  T
Q  433 ggattatgaaggtttgccgttttgtaaattccacacatttttgcctttg 481  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41815810 ggattatgaaggtttg-cgttttgtaaattccacacatttttgcctttg 41815763  T

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Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 41816219 - 41816141
Alignment:
Q  19 gttaccaaagctcaaattgttgaccattatgctcaaattttgaccaaaatcatgggaaagtaagtaaggacattcaatt 97  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41816219 gttaccaaagctcaaattgttgaccattatgctcaaattttgaccaaaatcatgggaaagtaagtaaggacattcaatt 41816141  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 10455173 - 10455113
Alignment:
Q  245 tgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    ||||||||| |||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  10455173 tgaacttgacgaggattgtgcatatgagctagctgtttagctttttagattcttaaccttt 10455113  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 519036 - 519103
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||||||||  |||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  519036 tttgatgtgaacttggcgaggattgtgcatatgagctagctgtttagctttttagattcttaaccttt 519103  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 21153219 - 21153286
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||||||||| ||| |||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  21153219 tttgatgtgaacttgacgagcattgtgcatatgagctagctgtttagctttttagattcttaaccttt 21153286  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Complemental strand, 24460190 - 24460133
Alignment:
Q  248 acttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||||| ||||||||| || |||| ||| ||| |||||||| ||||||||||||||||    
T  24460190 acttgacgaggattgtacatatgaactagctgtttagctttttagattcttaaccttt 24460133  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 39069569 - 39069636
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||| ||||| |||||||||||| |||||||| ||| |||||||| ||||||||||||||||    
T  39069569 tttgatgtgagcttgacgaggattgtgcatatgagctagctgtttagctttttagattcttaaccttt 39069636  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 54409976 - 54410043
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||||||||| |||||||||||| ||||||||  || |||||||| ||||||||||||||||    
T  54409976 tttgatgtgaacttgacgaggattgtgcatatgagctagttgtttagctttttagattcttaaccttt 54410043  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 55135986 - 55135919
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||||||||| |||||||||||| |||||||| ||| |||||||| ||| ||||||||||||    
T  55135986 tttgatgtgaacttgacgaggattgtgcatatgagctagctgtttagctttttagtttcttaaccttt 55135919  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 32000615 - 32000548
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||||||||| |||||||||||| ||||||||  || |||||||| |||||| |||||||||    
T  32000615 tttgatgtgaacttgacgaggattgtgcatatgagctagttgtttagctttttagatttttaaccttt 32000548  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 238 - 305
Target Start/End: Original strand, 6720155 - 6720222
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagctttatagattcttaaccttt 305  Q
    |||| ||||||||||| ||||||| |||| |||||||| ||| ||| |||| ||||||||||||||||    
T  6720155 tttgatgtgaacttgacgaggattttgcatatgagctagctgtttaactttttagattcttaaccttt 6720222  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 305
Target Start/End: Complemental strand, 47650201 - 47650129
Alignment:
Q  238 tttgttgtgaacttgatgaggattgtgcacatgagctatctggttagcttta-----tagattcttaaccttt 305  Q
    |||| ||||||||||| |||||||||||| |||||||| ||| |||||||||     ||||||||||||||||    
T  47650201 tttgatgtgaacttgacgaggattgtgcatatgagctagctgtttagctttaatttttagattcttaaccttt 47650129  T

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