View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_13 (Length: 380)
Name: NF16093_low_13
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 375
Target Start/End: Complemental strand, 33631540 - 33631202
Alignment:
| Q |
18 |
atagtctctaaaagctagcaaacacacaaactcacgaattcacaaaaccaagtctccgtcaacctcaaaaaacacttgctactttgaatttaaccagtct |
117 |
Q |
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| T |
33631540 |
atagtctctaaaagctagcaaacacacaaactcacgaattcacgaaaccaagtctccgtaaacctcaaaaaacacttgctactttgaatttaaccagtct |
33631441 |
T |
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| Q |
118 |
tgctgcaagcaccggagccacaacaacaccaacactagagtctagacacatttaaaaagctacataactttcaacatttgcaacctccaatcccatattg |
217 |
Q |
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| T |
33631440 |
tgctgcaagcaccggagccacaacaacaccaacactagagtctagacacatttaaaaagctacataactttcaacatttgcaacctccaatcccatgttg |
33631341 |
T |
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| Q |
218 |
caaattcatgtactgtttgtgtttaatttgaataaaatttctcaacatatgctagtggttggactctactcaagtgaaatttttggatgggcaaacaagt |
317 |
Q |
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| T |
33631340 |
caaattcatgtactgtttgtgtttactttgaataaaatttctcaacatatgct-------------------agtgaaatttttggatgggcaaacaagt |
33631260 |
T |
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| Q |
318 |
ttactgttatgacttatgacgctagtttttagggtttgaactttgtacctcctatgct |
375 |
Q |
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| T |
33631259 |
ttactgttatgaattatgatgctagtttttagggtttgaactttgtacctcctttgct |
33631202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 45 - 375
Target Start/End: Complemental strand, 50948210 - 50947895
Alignment:
| Q |
45 |
aaactcacgaattcacaaaaccaagtctccgtcaacctcaaaaaacacttgctactttgaatttaaccagtctt----gctgcaagcaccggagccacaa |
140 |
Q |
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| T |
50948210 |
aaacacacaaattcacgaaaccaattctccgtcaacctcaaaaaacacttgctactttgaatgtaaccagtcttaattgctgcaagctctagagccacaa |
50948111 |
T |
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| Q |
141 |
caacaccaacactagagtctagacacatttaaaaagctacataactttcaacatttgcaacctccaatcccatattgcaaattcatgtactgtttgtgtt |
240 |
Q |
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| T |
50948110 |
caacaccaag--------ctagacacatgtaaaaagctacataact--caacattttcaacctccaatcccatgtagcaaattcatgtactgtttgtg-- |
50948023 |
T |
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| Q |
241 |
taatttgaataaaatttctcaacatatgctagtggttggactctactcaagtgaaatttttggatgggcaaacaagtttactgttatgacttatgacgct |
340 |
Q |
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| T |
50948022 |
---tttgaataagatttctcaacatatgctagtggttggactctact-aagtggattttttggacggg--aacaagtttactgttatga-atatgatgct |
50947930 |
T |
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| Q |
341 |
agtttttagggtttgaactttgtacctcctatgct |
375 |
Q |
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| T |
50947929 |
agtatttagggtttgaaccctgcacctcctttgct |
50947895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 228
Target Start/End: Complemental strand, 50957436 - 50957370
Alignment:
| Q |
162 |
gacacatttaaaaagctacataactttcaacatttgcaacctccaatcccatattgcaaattcatgt |
228 |
Q |
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| T |
50957436 |
gacacatgtaaaaagctatataactctcaacattcccaacctccgatcccatattgcaaattcatgt |
50957370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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