View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_15 (Length: 349)
Name: NF16093_low_15
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 24 - 333
Target Start/End: Original strand, 45196110 - 45196419
Alignment:
| Q |
24 |
gagaattccacgaattaatttcagtcgttagatattagaatttctggaaaacatggattgatagaaataaaagtgggtcacgctgcagttacacatttat |
123 |
Q |
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| T |
45196110 |
gagaattccacgaattaatttcagtcgttaaatattagaatttctggaaaacatggattgatagaaataaaagtgggtcacgctgcagttacacatttat |
45196209 |
T |
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| Q |
124 |
gtcgtgaagttttcgtgagccattttttcgggacatctagcatttctgtttgaaaatatatgttatcttacacataaaactatagtaattaaaattttca |
223 |
Q |
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| T |
45196210 |
gtcgtgaagttttcgtgagccattttttcgggacatctagcatttctgtttgaaaatatatgttatcttacacataaaactatagtaattaaaattttca |
45196309 |
T |
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| Q |
224 |
tttctatatagaaatgaagaggatcgtactctataaggaatggggcattaatcatgttcactttgcgaccataacgattttcacttcctaacacttgttg |
323 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45196310 |
tttctatatagaaataaagaggatcgtactctataaggaatggggcattaatcatgttcactttgcgaccataacgattttcacttgctaacacttgttg |
45196409 |
T |
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| Q |
324 |
gtggtgatat |
333 |
Q |
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|||||||||| |
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| T |
45196410 |
gtggtgatat |
45196419 |
T |
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