View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_16 (Length: 321)
Name: NF16093_low_16
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 5040638 - 5040932
Alignment:
| Q |
13 |
aacctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaacccta |
112 |
Q |
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| T |
5040638 |
aacctgtgaccttaaaaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaacccta |
5040737 |
T |
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| Q |
113 |
attctttcacctattctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnnnncaattacat |
212 |
Q |
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| T |
5040738 |
attctttcacttattctttctcttctatgccttgcagcaacagtttgaggatcatttgatatctttacattcttcctcttcggctttttttcaattacat |
5040837 |
T |
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| Q |
213 |
caatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttca |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5040838 |
caatatcatccattccaaaattcactggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcagcttcttca |
5040932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 28 - 299
Target Start/End: Original strand, 43186976 - 43187238
Alignment:
| Q |
28 |
aaacttgagataatttgcagcttcatcaagcattgaagcagtgtccattttgcttccaccaggtacaatcttttgcaaaaccctaattctttcacctatt |
127 |
Q |
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||||||||| ||||| |||||||||||||||||||| ||||||||||| ||| |||||||||| |||||||| ||||| || ||||| ||||||| |||| |
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| T |
43186976 |
aaacttgaggtaattagcagcttcatcaagcattgatgcagtgtccatcttggttccaccaggaacaatcttctgcaagactctaatcctttcacttatt |
43187075 |
T |
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| Q |
128 |
ctttcccttctatgtcttgcagcaacagtttgtggatcatttgatatctttacattcttcctcttaggcnnnnnnncaattacatcaatatcatccattc |
227 |
Q |
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| T |
43187076 |
ctttcccttctttgcctagccgccacagtttgtggatcctttgatatcttaacattcttccttttaggctt--------ttccatcact----tccaaac |
43187163 |
T |
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| Q |
228 |
caaaattc---actggtctaaatgctgctgctctatacatcatttccttcatttgtgctattgcttctggatcag |
299 |
Q |
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| T |
43187164 |
ccaaattcgtcaccggcctaaatgctgcagctctatatatcatttccttcatttgtgctattgcctctggatcag |
43187238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 192
Target Start/End: Complemental strand, 6259698 - 6259553
Alignment:
| Q |
47 |
gcttcatcaagcattgaagcagtgtccattttgcttccaccaggtac-aatcttttgcaaaaccctaattctttcacctattctttcccttctatgtctt |
145 |
Q |
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|||||||| | ||| ||||||||||||||||| ||||||||||||| ||||||| | || | ||| |||||||||| |||||||| |||||||||||| |
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| T |
6259698 |
gcttcatctaacatagaagcagtgtccatttttgttccaccaggtactaatcttt-gtaatatccttattctttcactaattctttctcttctatgtctt |
6259600 |
T |
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| Q |
146 |
gcagcaacagtttgtggatcatttgatatctttacattcttcctctt |
192 |
Q |
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|| || ||| |||||||||| ||||| ||||| |||||||| ||||| |
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| T |
6259599 |
gctgctacactttgtggatcctttgaaatcttcacattctttctctt |
6259553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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