View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_18 (Length: 319)
Name: NF16093_low_18
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_18 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 61 - 319
Target Start/End: Complemental strand, 38368028 - 38367768
Alignment:
| Q |
61 |
aatcattattaatcaagaaaaatgaattgctcggaacttaaaaatgtgat--tttataaaggttgcttggaactnnnnnnntagttatcacattttgttc |
158 |
Q |
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| T |
38368028 |
aatcattattaatcaagaaaaatgaattgctcggaacttaaaaatgtgataatttattacggttgcttggaactaaaaaaatagttatcacattttgtcc |
38367929 |
T |
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| Q |
159 |
atgtaagtataattcagttggtaaacattgattttatatataaagatcgaagtttaaactctaatttccgtacatattaggtgaatttttaaccaataga |
258 |
Q |
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| T |
38367928 |
ttataagtataattcagttggtaaatattgattttatatataaagatcgaagtttaaactctaatttccgtacttattagatgaatttttaaccaataga |
38367829 |
T |
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| Q |
259 |
ttccttgtgacacaaaataaattaccgcagtttctatcaatgctcttacttatcttattat |
319 |
Q |
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| T |
38367828 |
ttccttgacacacaaaataaattaccgcagtttctatcaaagctcttacttatcttattat |
38367768 |
T |
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