View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_21 (Length: 255)
Name: NF16093_low_21
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1361572 - 1361337
Alignment:
| Q |
1 |
atgtaattattcacatttctccatgaagatgtcagcatgttaaatcaatgctaactttgctctttcttgagtgattattactaattataaattttcaaat |
100 |
Q |
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| T |
1361572 |
atgtaattattcacatttctccatgaagatgtcagcatgttaaatcaatgctaactttgc---taattgagtgattattactaattataaattttcaaat |
1361476 |
T |
|
| Q |
101 |
tttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaatacaagacttcacaagacc-aaacagaaattgcagagagatt |
199 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| |||| |
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| T |
1361475 |
tttatctataaaacttgacaaacttgagcatttttaacattgagtaaccaaacagtaatacacgacttcacaagacctaaacagaaattgcagagtgatt |
1361376 |
T |
|
| Q |
200 |
aacataaaatgtgataatcaattgagtagaactagaact |
238 |
Q |
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| T |
1361375 |
aacataaaatgtgataatcaattgagtagaactagaact |
1361337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 33 - 179
Target Start/End: Complemental strand, 1351017 - 1350874
Alignment:
| Q |
33 |
cagcatgttaaatcaatgctaactttgctctttcttgagtgattattactaattataaattttcaaattttatctataaaacttgacaaacttgaacatt |
132 |
Q |
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|||||||| |||||||||| ||||| |||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
1351017 |
cagcatgtgaaatcaatgcaaacttcgctctt----gagtgattattactaattatgaattttcaaattttatcaataaaacttgacaaacttgagcatt |
1350922 |
T |
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| Q |
133 |
tttaacattgagaaaccaaacagtaataca-agacttcacaagaccaa |
179 |
Q |
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| T |
1350921 |
tttaacattaagaaaccaaacagtaatacaccaacttcacaagaccaa |
1350874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Complemental strand, 1344653 - 1344572
Alignment:
| Q |
77 |
attactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
158 |
Q |
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| T |
1344653 |
attactaattatgaattttcaaattacatctagaggacttcaaaaatttgattagttttaacattgagaaaccaaatagtaa |
1344572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 1354910 - 1354990
Alignment:
| Q |
77 |
attactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
158 |
Q |
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| T |
1354910 |
attactaattatgaattttcaaattacatctaaaaaacttcacaaatttgagca-ttctaacattaagaaactaaatagtaa |
1354990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 29051899 - 29051978
Alignment:
| Q |
79 |
tactaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
158 |
Q |
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|||||||||| |||||||||||| || || ||||||| ||||| |||| ||||| |||||||||||||||||| ||||| |
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| T |
29051899 |
tactaattatgaattttcaaattacatatagaaaacttcacaaatttgagcatttctaacattgagaaaccaaatagtaa |
29051978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 158
Target Start/End: Complemental strand, 13590735 - 13590657
Alignment:
| Q |
80 |
actaattataaattttcaaattttatctataaaacttgacaaacttgaacatttttaacattgagaaaccaaacagtaa |
158 |
Q |
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|||||| || |||||||||||| |||||||||||| ||||| |||| |||||||| || |||||||||||| ||||| |
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| T |
13590735 |
actaatcatgaattttcaaattacatctataaaactatacaaatttgagcatttttaccactgagaaaccaaatagtaa |
13590657 |
T |
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