View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16093_low_22 (Length: 249)

Name: NF16093_low_22
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16093_low_22
NF16093_low_22
[»] chr3 (9 HSPs)
chr3 (1-233)||(1187532-1187764)
chr3 (31-184)||(1205324-1205478)
chr3 (104-184)||(1303624-1303705)
chr3 (105-145)||(477086-477126)
chr3 (107-154)||(482051-482098)
chr3 (110-145)||(7034282-7034317)
chr3 (94-137)||(24103983-24104026)
chr3 (108-153)||(7179044-7179089)
chr3 (113-153)||(8399989-8400029)
[»] chr5 (2 HSPs)
chr5 (107-150)||(28092157-28092200)
chr5 (108-145)||(33957510-33957547)
[»] chr2 (4 HSPs)
chr2 (107-153)||(43866518-43866564)
chr2 (113-153)||(38990187-38990227)
chr2 (104-151)||(43863047-43863094)
chr2 (104-151)||(43874198-43874245)
[»] chr7 (2 HSPs)
chr7 (111-145)||(6845249-6845283)
chr7 (110-144)||(6849822-6849856)
[»] chr4 (1 HSPs)
chr4 (104-153)||(52187903-52187952)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 1187532 - 1187764
Alignment:
Q  1 atcccgcattcatcctttatttaaggctgatgagctcccttccttctgtaacttgaagtcgttgaatatagaagcaccccgaccttcatcggtacctacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1187532 atcccgcattcatcctttatttaaggctgatgagctcccttccttctgtaacttgaagtcgttgaatatagaagccccccgaccttcatcggtacctacc 1187631  T
Q  101 aatatggtggactttttgcttcaaaactcaccctcggcaaaggttcacatcatcgagaatgaaactttttaaaggtagattgtcgcataatttcattttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1187632 aatatggtggactttttgcttcaaaactcaccctcggcaaaggttcacatcatcgagaatgaaactttttaaaggtagattgtcgcataatttcattttt 1187731  T
Q  201 gtatcccttctctgttttccatgaatatgtgtg 233  Q
    |||||||||||||||||||||||||||||||||    
T  1187732 gtatcccttctctgttttccatgaatatgtgtg 1187764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 31 - 184
Target Start/End: Original strand, 1205324 - 1205478
Alignment:
Q  31 tgagctcccttccttctgtaacttgaagtcgttgaatatagaagcaccccgaccttcatcggtacctaccaatatggtggactttttgcttcaaaactca 130  Q
    |||| |||||||||| ||| ||||||||||||||||| ||  |||   |||| |||||| | ||  | |  | |||||||||||||||||||||||||||    
T  1205324 tgagttcccttccttgtgttacttgaagtcgttgaatgtacgagcgttccgatcttcatggataattgctgaaatggtggactttttgcttcaaaactca 1205423  T
Q  131 ccctcggcaaaggttcacatcatcgaga-atgaaactttttaaaggtagattgtc 184  Q
    ||||| |||||| ||| | |||||||||  ||||||||||||||| || ||||||    
T  1205424 ccctcagcaaagtttcgcttcatcgagaggtgaaactttttaaagatacattgtc 1205478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 184
Target Start/End: Complemental strand, 1303705 - 1303624
Alignment:
Q  104 atggtggactttttgcttcaaaactcaccctcggcaaaggttcacatcatcgaga-atgaaactttttaaaggtagattgtc 184  Q
    |||||||||||||||||||||||||||||||| |||||| ||| | |||||||||  ||||||||||||||| || ||||||    
T  1303705 atggtggactttttgcttcaaaactcaccctcagcaaagtttcgcttcatcgagaggtgaaactttttaaagatacattgtc 1303624  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 477086 - 477126
Alignment:
Q  105 tggtggactttttgcttcaaaactcaccctcggcaaaggtt 145  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  477086 tggtggactttttgcttcaaaactcaccctcagcaaaggtt 477126  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 154
Target Start/End: Original strand, 482051 - 482098
Alignment:
Q  107 gtggactttttgcttcaaaactcaccctcggcaaaggttcacatcatc 154  Q
    |||||||||||||||||||||||||  |||||||||||| || |||||    
T  482051 gtggactttttgcttcaaaactcacgatcggcaaaggttgacttcatc 482098  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 145
Target Start/End: Original strand, 7034282 - 7034317
Alignment:
Q  110 gactttttgcttcaaaactcaccctcggcaaaggtt 145  Q
    |||||||||||||||||||||||||| |||||||||    
T  7034282 gactttttgcttcaaaactcaccctcagcaaaggtt 7034317  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Complemental strand, 24104026 - 24103983
Alignment:
Q  94 acctaccaatatggtggactttttgcttcaaaactcaccctcgg 137  Q
    ||||||||| ||||| |||| |||||||||||||||||||||||    
T  24104026 acctaccaaaatggtagactatttgcttcaaaactcaccctcgg 24103983  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 153
Target Start/End: Original strand, 7179044 - 7179089
Alignment:
Q  108 tggactttttgcttcaaaactcaccctcggcaaaggttcacatcat 153  Q
    |||| |||||||||||||||||||| || ||||||||| |||||||    
T  7179044 tggattttttgcttcaaaactcaccatcagcaaaggttaacatcat 7179089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 153
Target Start/End: Complemental strand, 8400029 - 8399989
Alignment:
Q  113 tttttgcttcaaaactcaccctcggcaaaggttcacatcat 153  Q
    |||||||||||||||||||| || ||||||||| |||||||    
T  8400029 tttttgcttcaaaactcaccatcagcaaaggttaacatcat 8399989  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 28092157 - 28092200
Alignment:
Q  107 gtggactttttgcttcaaaactcaccctcggcaaaggttcacat 150  Q
    |||||||||||| |||||||||||||||||||||||||| ||||    
T  28092157 gtggactttttgattcaaaactcaccctcggcaaaggttgacat 28092200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 33957547 - 33957510
Alignment:
Q  108 tggactttttgcttcaaaactcaccctcggcaaaggtt 145  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  33957547 tggaatttttgcttcaaaactcaccttcggcaaaggtt 33957510  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 43866564 - 43866518
Alignment:
Q  107 gtggactttttgcttcaaaactcaccctcggcaaaggttcacatcat 153  Q
    |||||||||||| ||||||||||||||||| |||||||| |||||||    
T  43866564 gtggactttttgattcaaaactcaccctcgacaaaggttgacatcat 43866518  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 38990187 - 38990227
Alignment:
Q  113 tttttgcttcaaaactcaccctcggcaaaggttcacatcat 153  Q
    |||||| |||||||||||||||||||||||||| |||||||    
T  38990187 tttttgattcaaaactcaccctcggcaaaggttgacatcat 38990227  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 43863094 - 43863047
Alignment:
Q  104 atggtggactttttgcttcaaaactcaccctcggcaaaggttcacatc 151  Q
    ||||| ||||||||| ||||||||||||||||| |||||||| |||||    
T  43863094 atggtagactttttgattcaaaactcaccctcgacaaaggttgacatc 43863047  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 151
Target Start/End: Complemental strand, 43874245 - 43874198
Alignment:
Q  104 atggtggactttttgcttcaaaactcaccctcggcaaaggttcacatc 151  Q
    ||||||||||||||| ||||||||||||||| | |||||||| |||||    
T  43874245 atggtggactttttgattcaaaactcacccttgacaaaggttgacatc 43874198  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 6845249 - 6845283
Alignment:
Q  111 actttttgcttcaaaactcaccctcggcaaaggtt 145  Q
    ||||||||||||||||||||||||| |||||||||    
T  6845249 actttttgcttcaaaactcaccctcagcaaaggtt 6845283  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 144
Target Start/End: Original strand, 6849822 - 6849856
Alignment:
Q  110 gactttttgcttcaaaactcaccctcggcaaaggt 144  Q
    |||||||||||||||||||||||||| ||||||||    
T  6849822 gactttttgcttcaaaactcaccctcagcaaaggt 6849856  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 153
Target Start/End: Original strand, 52187903 - 52187952
Alignment:
Q  104 atggtggactttttgcttcaaaactcaccctcggcaaaggttcacatcat 153  Q
    |||||||  |||||| |||||||||||||||||||||| ||| |||||||    
T  52187903 atggtgggatttttgattcaaaactcaccctcggcaaaagttgacatcat 52187952  T

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