View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_25 (Length: 236)
Name: NF16093_low_25
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 6963120 - 6962921
Alignment:
| Q |
18 |
ccaagaacgacgaacctcggtaagatggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtgaagaggaatgg |
117 |
Q |
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| T |
6963120 |
ccaagaacgacgaacctcggtaagatggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtgaagaggaatgg |
6963021 |
T |
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| Q |
118 |
cacgcgctcgcctccagggagctgaacagtcacagcagcataatcaatgccatctttctcctcgaatttgactgtaccgtcaggagatacttcgaatggt |
217 |
Q |
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| T |
6963020 |
cacgcgctcgcctccggggagctgaacagtcacagcagcataatcaatgccatctttctcctcgaatttgactgtaccgtcaggagatacttcgaatggt |
6962921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 32 - 189
Target Start/End: Original strand, 33606204 - 33606361
Alignment:
| Q |
32 |
cctcggtaagatggtactaaaaactctccactaaagctgtccggcttccctgacgctaccaactgtttgatcgtgaagaggaatggcacgcgctcgcctc |
131 |
Q |
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| T |
33606204 |
cctctgtatgatggtaccaaatactcaccactgaagctctctggcttccctgatgctaccaattgtttgatggtgaaaaggaatggcacacgctcaccac |
33606303 |
T |
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| Q |
132 |
cagggagctgaacagtcacagcagcataatcaatgccatctttctcctcgaatttgac |
189 |
Q |
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| T |
33606304 |
cgggaagctgaactgtgactgcggcgtagtcaatgccatctttctcctcaaatttgac |
33606361 |
T |
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