View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_26 (Length: 230)
Name: NF16093_low_26
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 54219131 - 54219331
Alignment:
| Q |
16 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctga |
115 |
Q |
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| T |
54219131 |
aaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatctccctga |
54219230 |
T |
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| Q |
116 |
acaagaaccaatatacaagtc----aatgtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatatacc |
211 |
Q |
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| T |
54219231 |
acaagaaccaatatacaagtcaattaatgtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataagatatacc |
54219330 |
T |
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| Q |
212 |
t |
212 |
Q |
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| T |
54219331 |
t |
54219331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 31217530 - 31217613
Alignment:
| Q |
15 |
gaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
98 |
Q |
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| T |
31217530 |
gaaaatctgaaatatcacatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 17595371 - 17595307
Alignment:
| Q |
13 |
aagaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
77 |
Q |
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| T |
17595371 |
aagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 14728114 - 14728178
Alignment:
| Q |
13 |
aagaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
77 |
Q |
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|||||||||||| | |||||||| ||||||||||||| ||| ||| ||||| || |||| ||||| |
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| T |
14728114 |
aagaaaatctgatatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
14728178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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