View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16093_low_4 (Length: 622)
Name: NF16093_low_4
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 553; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 37915286 - 37914701
Alignment:
| Q |
18 |
taagtacgctatctctttcatgggaaggaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgttatagctttggaaacaaatgccca |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37915286 |
taagtactctatctctttcatgggaaggaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgttatagctttggaaacaaatgccca |
37915187 |
T |
|
| Q |
118 |
aaatttcatgaaatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37915186 |
aaatttcatgaaatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatg |
37915087 |
T |
|
| Q |
218 |
gccatgagaggaacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagata |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37915086 |
gccatgagaggaacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagata |
37914987 |
T |
|
| Q |
318 |
tgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagg |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37914986 |
tgaggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagg |
37914887 |
T |
|
| Q |
418 |
gatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttggg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37914886 |
gatgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttggg |
37914787 |
T |
|
| Q |
518 |
tgaggaaagtggtagaagaagatgcgtttaannnnnnntttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgt |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37914786 |
tgaggaaagtggtagaagaagatgcgtttaagggggggtttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgt |
37914701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 247 - 596
Target Start/End: Complemental strand, 37906894 - 37906545
Alignment:
| Q |
247 |
ttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattca |
346 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37906894 |
ttgttcggtacgaggtggaggtaaatttggaacgagatggtgccagttttgagcatcttgtgaatcagatacgaggatgttgaagtctgctgaggattca |
37906795 |
T |
|
| Q |
347 |
gctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaaga |
446 |
Q |
| |
|
|||| |||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37906794 |
gctacagtgaaggaaatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaaga |
37906695 |
T |
|
| Q |
447 |
agtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgttt |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
37906694 |
agtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatacgttt |
37906595 |
T |
|
| Q |
547 |
aannnnnnntttgcagtaaaaccaagaaatgtcaaagaaagtgagaggga |
596 |
Q |
| |
|
|| || ||||||||||| |||||||| ||||| |||||||||| |
|
|
| T |
37906594 |
aacagtgggttgacagtaaaaccatgaaatgtcgaagaaggtgagaggga |
37906545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 26 - 545
Target Start/End: Original strand, 37960950 - 37961472
Alignment:
| Q |
26 |
ctatctctttcatgggaaggaagatcaagaggcggagagtattcaagagacaactcgttgttgtttgtt---atagctttggaaacaaatgcccaaaatt |
122 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||| || || ||||| |||| | | |||||||||| |
|
|
| T |
37960950 |
ctatctctttcatgtgaaggaagatcaagaggcggagagtattcaagagacaaattattgttgttttttgctatggcttttgaaagagaggcccaaaatt |
37961049 |
T |
|
| Q |
123 |
tcatgaaatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccat |
222 |
Q |
| |
|
||| |||||| ||||||||||||||||||||| |||| || || | || || ||||| ||||| ||||| || |||| ||||| |||||| ||||| |
|
|
| T |
37961050 |
tcacgaaatggtgaagtgattttccgtctgcagcaacatggttgtaacttaggcaaatagacaagccggagtttggaagaacggtgacttgaatagccat |
37961149 |
T |
|
| Q |
223 |
gagaggaacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgagg |
322 |
Q |
| |
|
| ||| | || | || | |||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
37961150 |
tatagggatgatgcgagtgttgtcttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgagg |
37961249 |
T |
|
| Q |
323 |
atgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggagggatga |
422 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||| ||||| |||||||||||||||| || |
|
|
| T |
37961250 |
atattgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttttgggaatttggagggacga |
37961349 |
T |
|
| Q |
423 |
tgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgagg |
522 |
Q |
| |
|
||||||| |||| || || ||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
37961350 |
tgaggttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgagg |
37961449 |
T |
|
| Q |
523 |
aaagtggtagaagaagatgcgtt |
545 |
Q |
| |
|
||| |||||||||||||| |||| |
|
|
| T |
37961450 |
aaaatggtagaagaagatacgtt |
37961472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 159
Target Start/End: Complemental strand, 37907030 - 37906982
Alignment:
| Q |
113 |
gcccaaaatttcatgaaatgatgaagt--gattttccgtctgcaacaac |
159 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
37907030 |
gcccaaaatttcatgaaatgatgaagtacgattttccgtatgcagcaac |
37906982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 3e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 26 - 548
Target Start/End: Complemental strand, 3783390 - 3782862
Alignment:
| Q |
26 |
ctatctctttcatgggaaggaaga---tcaagaggcggagagtattcaagagacaactcgttgttgtttgttatagctttggaaacaaatgcccaaaatt |
122 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||| ||| ||||| || ||||||| | ||| | | |||||||||| ||| ||| | || |
|
|
| T |
3783390 |
ctatctctttcatgtgaaggaagaagatcaagaggcagagagtgttctagagataatctgttgttgatggttttggttttggaaacatatgaccagagtt |
3783291 |
T |
|
| Q |
123 |
tcatgaaatgatgaagtgattttccgtctgcaacaacgtgtttaaacgcgagacatatagagaagccagagttaggtagaatggtgatttgaatggccat |
222 |
Q |
| |
|
||||||| || |||||||||||||| || | ||| ||| ||||||| ||| || |||| ||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
3783290 |
tcatgaattggtgaagtgattttccatcacctgcaatgtggttaaacgtgaggcagatagcgaatccagagttaggtagaatggtgacttgaatggccat |
3783191 |
T |
|
| Q |
223 |
gagaggaacaatacatgtaccattttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgt---gaatcagatatg |
319 |
Q |
| |
|
||||| || | | ||| |||| ||||||||| |||| | ||| || || |||| || ||||||| |||||| | |||||||| ||||| || || |
|
|
| T |
3783190 |
tagagggacgacgcgtgtgtcattgtgttcagtatgaggagaaggcaagttcggaaaaaaagggtgcaaatttttaacatcttgtgaagaatctgaaata |
3783091 |
T |
|
| Q |
320 |
aggatgttgaagtctgctgaggattcagctatggtgaaggagatagagtcttgatcaaggtaacgtatgtaaggaggagtgttatgggaatttggaggga |
419 |
Q |
| |
|
|||| |||||||| |||| |||||||||| ||||||||||||| ||||||| || ||||| ||||| ||||| ||| || | ||||| || ||| | |
|
|
| T |
3783090 |
aggaggttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagggggaacattttcggaatgtgaaggaa |
3782991 |
T |
|
| Q |
420 |
tgatgaggttggaggtgaagggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtg |
519 |
Q |
| |
|
| || || ||||| | | | ||||||||||||| ||||| | |||||| |||||||||||||| |||||| |||||||||| |||||||||||||| || |
|
|
| T |
3782990 |
ttataagattggaagagtatggaaagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatg |
3782891 |
T |
|
| Q |
520 |
aggaaagtggtagaagaagatgcgtttaa |
548 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3782890 |
aggaaagtggtagaagaagatgcgtttaa |
3782862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University