View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16093_low_5 (Length: 617)
Name: NF16093_low_5
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 214 - 396
Target Start/End: Complemental strand, 30414763 - 30414585
Alignment:
| Q |
214 |
aaaaatgcaaacaaaaatcaaagaagagctacagctagcacacgannnnnnnaaatgtccaagaatcatttctgatctaatataacatgtaagctacatt |
313 |
Q |
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| T |
30414763 |
aaaaatgcaaacaaaaatcaaagaagagctacagctagcacccgatttttttaaatgtccaagaatcatttctgatctaatataacatgtaagctacatt |
30414664 |
T |
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| Q |
314 |
tataatcatgttattgaaaaatagagctgtgtatgtaagtaatgtttgtacgccctttggatattttggaaaatgtgattaaa |
396 |
Q |
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| T |
30414663 |
tataatcatgttattgaaaaatagagctg----tgtaagtaatgtttgtacgccctttggatattttggaaaatgtgattaaa |
30414585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 389 - 561
Target Start/End: Complemental strand, 30414569 - 30414397
Alignment:
| Q |
389 |
tgattaaatgttggttggtattttgttaacgggtttagannnnnnnnnnnnnnngctagcgccgagttgaactcatgacttcataatcactcaatattcc |
488 |
Q |
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| T |
30414569 |
tgataaaatgttggttggtattttgttaacgggtttaga-tttttattttttttgctagcgccgagttgaactcatgacttaataatcactcaatattcc |
30414471 |
T |
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| Q |
489 |
tccgtcataccactactaactcaccttatcactccttcgtgaatgttaatgaat-aaattatccttatcttctt |
561 |
Q |
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| T |
30414470 |
tccgtcataccactactaactcaccttatcactctttcgtgaatgttaatgaataaaattatccttatcttctt |
30414397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 30414831 - 30414751
Alignment:
| Q |
68 |
tgtaaggtgaaatcttccatatattctgtgcgattacctatttcattctattcctaaaatggttaaataaaaatgcaaaca |
148 |
Q |
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| T |
30414831 |
tgtaaggtgaaatcttccatatattctgtgcgattacctatttcattctattcctaaaatggttaaataaaaatgcaaaca |
30414751 |
T |
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