View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16093_low_8 (Length: 542)
Name: NF16093_low_8
Description: NF16093
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16093_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 53 - 517
Target Start/End: Complemental strand, 22570230 - 22569757
Alignment:
| Q |
53 |
atcacaagtttcttccaccgaagatgatcctatttgaggcaccaccaaacatcaaacatagacac-tctcaacgaaaattttaacattagtttgccata- |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
22570230 |
atcacaagtttcttccaccgaagatgatcctatttgaggcaccaccaaacatcaaacatagacacctctcaacgaaaattttaacattagtttgccatat |
22570131 |
T |
|
| Q |
151 |
------------gactcttccggtaactttccgatgatttttaaaaaaggagaaaatcaagcttcaatagaaatactacagccttatatcaaaacctcaa |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22570130 |
tatgagagattagactcttccggtaactttccgatgatttttaaaaaaggagaaaatcaagcttcaatagaaatactacagccttatatcaaaacctcaa |
22570031 |
T |
|
| Q |
239 |
aatgtaacagaacaattatgtgaaattgtactatttttgaaggtaactccgaagtgaacctaacaaaaccaatgaagcattaaacagtatcaggcatatt |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22570030 |
aatgtaacagaacaattatgtgaaattgtactatttttgaaggtaactccgaagtgaacctaacaaaaccaatgaagcattaagcagtatcaggcatatt |
22569931 |
T |
|
| Q |
339 |
aattaagcagatttattctttcagagttcagaccctcattatgcagtacttaaattaattaagacacgtcaacactcattgggtggagaatatcctaaaa |
438 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22569930 |
aattaagcagatttattcttt-------cagaccctcattatgcagtacttaaattaattaagacacgtcaacactcattgggtggagaatatcctaaaa |
22569838 |
T |
|
| Q |
439 |
tgcaactatccaccataacagcct--tatgttattgaggcacttctgttctgaataactagccaaattaaaaatcaagagc |
517 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
22569837 |
tgcaactatccaccataacagccttatattttattaaggcacttctgttctgaataaccagccaaattaaaaatcaagagc |
22569757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University