View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16094_low_1 (Length: 329)
Name: NF16094_low_1
Description: NF16094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16094_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 329
Target Start/End: Original strand, 10342323 - 10342639
Alignment:
| Q |
12 |
agcaaaggctgcattctgagactgggaaagtcaatgtagatgatgctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttacaga |
111 |
Q |
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| T |
10342323 |
agcaaaggctgcattctgagattgggaa-gtcaatgtagatgatgctatatgttgcagcatattgcatttttgttcatacatccaatgtggtgttacaga |
10342421 |
T |
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| Q |
112 |
aagtttcaagaaagtagtatttgtacaaagaggtgtgtggaaacaagatcagtttatatcatgaaaacatgttcagatttgtactgtataaaataaaata |
211 |
Q |
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| T |
10342422 |
aagtttcaagaaattagtatttgtacaaagaggtgtgtggaaacaagatcagtttatatcatgaaaacatgttcagatttgtactgt-----ataaaata |
10342516 |
T |
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| Q |
212 |
tatattctcttaccaaatattaaggaaaaagtctatgctttgaattggaatatcttcttccatacgtgaaatacagtaaaaactgta-----tatattaa |
306 |
Q |
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| T |
10342517 |
tatattctctaaccaaatattgaggaataagtctatgctttgaattggaatatcttcatccatacgtgaaatacagtaaaaactgtatatattatattaa |
10342616 |
T |
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| Q |
307 |
ttgtgtgaaactgtggatacact |
329 |
Q |
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| T |
10342617 |
ttgtgtgaaactgtggatacact |
10342639 |
T |
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