View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16094_low_4 (Length: 238)
Name: NF16094_low_4
Description: NF16094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16094_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 3 - 159
Target Start/End: Original strand, 43025733 - 43025890
Alignment:
| Q |
3 |
agcagcaaccgtttcatatacaaatcagaatt-acttccaatctgcaaaaccctcaattcagttatgtttctatttttatatgctagaactagaaaccag |
101 |
Q |
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| T |
43025733 |
agcagcaaccgtttcatatacaaatcagaatttacttccaatctgcaaaaccctcaattcagttatgtttctatttttatatgatagaactagaaaccag |
43025832 |
T |
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| Q |
102 |
cctttttctaaaccatcgtttttatcttaaatttgaaattaacggtgttgagacataa |
159 |
Q |
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| T |
43025833 |
cctttttctaaaccatcgtttttatcttaaatttgaaattaaaggtgttgagacataa |
43025890 |
T |
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Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 22257972 - 22258054
Alignment:
| Q |
6 |
agcaaccgtttcatatacaaatcagaattact-------tccaatctgcaaaaccctcaattcagttatgtttctatttttat |
81 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||||||||| |
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| T |
22257972 |
agcaaccgtttcatatacaaatcagaattacaatttacatccaatctgcaaaacccttaattcaattatgtttctatttttat |
22258054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 30794036 - 30794115
Alignment:
| Q |
6 |
agcaaccgtttcatatacaaatcagaattac-------ttccaatctgcaaaaccctcaattcagttatgtttctatttt |
78 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
30794036 |
agcaaccgttttatatacaaatcagaattacaatttatttccaatctgcaaaacccttaattcaattatgtttctatttt |
30794115 |
T |
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