View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16094_low_5 (Length: 238)

Name: NF16094_low_5
Description: NF16094
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16094_low_5
NF16094_low_5
[»] chr4 (2 HSPs)
chr4 (36-223)||(5473264-5473451)
chr4 (115-169)||(33529032-33529086)
[»] chr7 (1 HSPs)
chr7 (38-223)||(21269108-21269292)
[»] chr2 (4 HSPs)
chr2 (28-223)||(27763851-27764043)
chr2 (115-169)||(32245911-32245965)
chr2 (94-169)||(5701029-5701101)
chr2 (115-221)||(19384262-19384360)
[»] chr1 (1 HSPs)
chr1 (27-223)||(49936615-49936808)
[»] chr5 (1 HSPs)
chr5 (28-223)||(43549700-43549892)
[»] chr8 (1 HSPs)
chr8 (117-167)||(33803659-33803709)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 5473264 - 5473451
Alignment:
Q  36 gctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctctattgtta 135  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5473264 gctatatagtacgggaattattttcacgggaaatttacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtgtctattgtta 5473363  T
Q  136 tgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttatt 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  5473364 tgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccgtttgattaattaagaattcattttatt 5473451  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 33529086 - 33529032
Alignment:
Q  115 tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacc 169  Q
    ||||||||||||  |||||||||||||||| ||||||||||||||||||| ||||    
T  33529086 tgcactatgtcttcattgttatgcaattcaaccaaagaaaaaggtggtcagcacc 33529032  T

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Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 38 - 223
Target Start/End: Original strand, 21269108 - 21269292
Alignment:
Q  38 tatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctctattgttatg 137  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21269108 tatatagtacgggaattatttttacgg-aaattcacgaacgcttagcaacctgatcactgtttctattgttatgcagtgcactatgtctctattgttatg 21269206  T
Q  138 caattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttatt 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  21269207 caatttagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccgtttgtttaattaagaattcattttatt 21269292  T

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Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 27764043 - 27763851
Alignment:
Q  28 agagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctc 127  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  27764043 agagaagtgctatatagtacgggaattattttcacgggaaattcacggacgcttagcaatctgatcacggtttctattgttatgcagtgcactatatctc 27763944  T
Q  128 tattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttatt 223  Q
    ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27763943 ta---ttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccgtttgtttaattaagaattcattttatt 27763851  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 32245911 - 32245965
Alignment:
Q  115 tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacc 169  Q
    ||||||||||||  |||||||||||||||| ||||| ||||||||||||||||||    
T  32245911 tgcactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaacacc 32245965  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 5701101 - 5701029
Alignment:
Q  94 acggtttctattgttatgcagtgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacc 169  Q
    ||||| ||||||||||||||   ||||||||||  |||||||||||||||| | |||||||||| |||||||||||    
T  5701101 acggtatctattgttatgca---cactatgtcttcattgttatgcaattcaacaaaagaaaaagatggtcaacacc 5701029  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 19384262 - 19384360
Alignment:
Q  115 tgcactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaatt 214  Q
    ||||||||||||  |||||||||||||||| ||||| ||||||||||| ||    |||||||    | |||||| |||||| |||||||||||| |||||    
T  19384262 tgcactatgtcttcattgttatgcaattcaaccaaataaaaaggtggttaa----caccgtt----tgaatttgatgcaccgtttgtttaattatgaatt 19384353  T

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Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 49936615 - 49936808
Alignment:
Q  27 tagagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtct 126  Q
    |||||||| | |||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49936615 tagagaagtgatatataatacaggaattattttcacgggaaattcacggacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtct 49936714  T
Q  127 ctattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttatt 223  Q
    |||   |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  49936715 cta---ttatgcaattcagccaaagaaaaaggtggtcaacacccacagtttcaattaatttgctgcaccgtttgtttaattaagaattcattttatt 49936808  T

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Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 28 - 223
Target Start/End: Complemental strand, 43549892 - 43549700
Alignment:
Q  28 agagaagggctatatagtacgggaattattttcacgggaaattcacgaacgcttagcaacctgatcacggtttctattgttatgcagtgcactatgtctc 127  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  43549892 agagaagtgctatatagtacgggaattattttcacgggaaattcacggacgcttagcaatctgatcacggtttctattgttatgcagtgcactatgtctc 43549793  T
Q  128 tattgttatgcaattcagccaaagaaaaaggtggtcaacacccaccgtttcaattaatttgctgcaccatttgtttaattaagaattcattttatt 223  Q
    ||   ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  43549792 ta---ttatgcaattcagccaaagaaaaagctggtcaacatccaccgtttcaattaatttgctccaccgtttgtttaattaagaattcattttatt 43549700  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 33803709 - 33803659
Alignment:
Q  117 cactatgtctctattgttatgcaattcagccaaagaaaaaggtggtcaaca 167  Q
    ||||||||||  |||||||||||||||| ||||| ||||||||||||||||    
T  33803709 cactatgtcttcattgttatgcaattcaaccaaataaaaaggtggtcaaca 33803659  T

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