View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16095_low_2 (Length: 390)

Name: NF16095_low_2
Description: NF16095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16095_low_2
NF16095_low_2
[»] chr2 (4 HSPs)
chr2 (16-231)||(17908888-17909103)
chr2 (224-390)||(17909544-17909711)
chr2 (317-387)||(6095886-6095956)
chr2 (346-390)||(11502536-11502580)
[»] chr1 (3 HSPs)
chr1 (250-369)||(39394658-39394777)
chr1 (317-390)||(10484603-10484675)
chr1 (317-390)||(19251536-19251609)
[»] chr3 (2 HSPs)
chr3 (269-387)||(45730510-45730628)
chr3 (317-390)||(33813235-33813308)
[»] scaffold0161 (2 HSPs)
scaffold0161 (269-390)||(27012-27133)
scaffold0161 (269-387)||(7921-8039)
[»] chr6 (3 HSPs)
chr6 (256-352)||(34355318-34355414)
chr6 (317-387)||(3622076-3622146)
chr6 (224-293)||(8564411-8564482)
[»] chr8 (3 HSPs)
chr8 (317-390)||(17724580-17724653)
chr8 (300-390)||(2792347-2792436)
chr8 (317-390)||(44164736-44164809)
[»] chr5 (4 HSPs)
chr5 (319-390)||(25086110-25086181)
chr5 (319-390)||(25144080-25144151)
chr5 (317-390)||(5585994-5586067)
chr5 (224-293)||(7778949-7779020)
[»] chr4 (1 HSPs)
chr4 (317-390)||(22209520-22209593)
[»] scaffold0016 (2 HSPs)
scaffold0016 (256-314)||(91121-91179)
scaffold0016 (264-314)||(91530-91580)
[»] scaffold0013 (1 HSPs)
scaffold0013 (317-390)||(44324-44397)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 17908888 - 17909103
Alignment:
Q  16 caacaagtaagtaagaaacaatcaagcttacttctattagaaaaactggtcaccgatagaattagttaaaactattatttaacaaatactagttagttac 115  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  17908888 caacaagtaagtaagaaacaatcaagcttacttctattagaagaactggtcactgatagaattagttaaaactattatttaacaaatactagttagttac 17908987  T
Q  116 ttgtctaggaagttagttatttttctgtttcttaggcttcaagttatttttctgtttcgttaatcaagttcagcaataagttcaaatttactctgtgaaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17908988 ttgtctaggaagttagttatttttctgtttcttaggcttcaagttatttttctgtttcgttaatcaagttcagcaataagttcaaatttactctgtgaaa 17909087  T
Q  216 ctaagatgatagattt 231  Q
    |||| |||||||||||    
T  17909088 ctaaaatgatagattt 17909103  T

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Target: chr2; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 224 - 390
Target Start/End: Original strand, 17909544 - 17909711
Alignment:
Q  224 atagatttaataacccttgcagttaagaccaatttcttggtgcagacttttgtatattttttccttttgataaaaatgttctctatgatttggcattttt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  17909544 atagatttaataacccttgcagttaagaccaatttcttggtgcagacttttgtatattttttccttttgataacaatgttctctatgatttgtcattttt 17909643  T
Q  324 attgtgttgattttcacctttcattactttcactgaatttaatttatgactttga-ttccatattcat 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17909644 attgtgttgattttcacctttcattactttcactgaatttaatttatgactttgatttccatattcat 17909711  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 6095886 - 6095956
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatatt 387  Q
    ||||||||||||||| |||| ||| ||| |||||||||||  |||||| ||||||| ||||||||||||||    
T  6095886 catttttattgtgtttatttccacgtttgattactttcacataatttagtttatgagtttgattccatatt 6095956  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 11502536 - 11502580
Alignment:
Q  346 attactttcactgaatttaatttatgactttgattccatattcat 390  Q
    |||||||||||  ||||||||||||||||||||||||||||||||    
T  11502536 attactttcacataatttaatttatgactttgattccatattcat 11502580  T

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Target: chr1 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 250 - 369
Target Start/End: Original strand, 39394658 - 39394777
Alignment:
Q  250 gaccaatttcttggtgcagacttttgtatattttttccttttgataaaaatgttctctatgatttggcatttttattgtgttgattttcacctttcatta 349  Q
    ||||||||||||||||||  ||||||||||||| || ||||||| |    |||||| ||||||||| |||||||||||||||||||| || |||||||||    
T  39394658 gaccaatttcttggtgcaagcttttgtatatttgtttcttttgacatcggtgttctttatgatttgtcatttttattgtgttgatttccatctttcatta 39394757  T
Q  350 ctttcactgaatttaattta 369  Q
    |||||| |||||||||||||    
T  39394758 ctttcattgaatttaattta 39394777  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 10484603 - 10484675
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||| ||| ||| |||||||||||  |||||||||||||| |||||||||||||||||    
T  10484603 catttttattgtgtt-atttccacgtttgattactttcacataatttaatttatgagtttgattccatattcat 10484675  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 19251609 - 19251536
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||| ||| ||| ||||||||||| ||||||| ||||| | |||||||||||||||||    
T  19251609 catttttattgtgtttatttccacatttgattactttcacagaatttagtttataagtttgattccatattcat 19251536  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 45730628 - 45730510
Alignment:
Q  269 acttttgtatattttttccttttgataaaaatgttctctatgatttggcatttttattgtgttgattttcacctttcattactttcactgaatttaattt 368  Q
    ||||||||||||| ||| |||||||| | || ||||| ||||||||| ||||||||||||||| |||| || |||| |||| || |||| ||||||||||    
T  45730628 acttttgtatattattttcttttgattacaacgttctttatgatttgtcatttttattgtgttcatttccagctttgattagttccactaaatttaattt 45730529  T
Q  369 atgactttgattccatatt 387  Q
    |||| ||||||||||||||    
T  45730528 atgattttgattccatatt 45730510  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 33813308 - 33813235
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||||||  ||| |||||||||||  ||||||||||||||||||||||||||||||||    
T  33813308 catttttattgtgtttattttcatgtttgattactttcacaaaatttaatttatgactttgattccatattcat 33813235  T

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Target: scaffold0161 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 269 - 390
Target Start/End: Complemental strand, 27133 - 27012
Alignment:
Q  269 acttttgtatattttttccttttgataaaaatgttctctatgatttggcatttttattgtgttgattttcacctttcattactttcactgaatttaattt 368  Q
    ||||||||||||| ||| |||||||| | |||||||||||||||||  ||||||||||||||| |||| ||||||| |||| || |||| |||||||||     
T  27133 acttttgtatattattttcttttgattacaatgttctctatgatttatcatttttattgtgtttatttccacctttgattatttccactaaatttaatta 27034  T
Q  369 atgactttgattccatattcat 390  Q
    |||| | ||||| |||||||||    
T  27033 atgattatgatttcatattcat 27012  T

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Target: scaffold0161; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 387
Target Start/End: Complemental strand, 8039 - 7921
Alignment:
Q  269 acttttgtatattttttccttttgataaaaatgttctctatgatttggcatttttattgtgttgattttcacctttcattactttcactgaatttaattt 368  Q
    ||||||||||||| ||| |||||||| | |||||||  ||||||||  |||||||||| |||| |||| ||  | | |||| || |||| |||||||||     
T  8039 acttttgtatattattttcttttgattacaatgttccgtatgatttatcatttttattatgtttatttccagatctgattatttccactaaatttaatta 7940  T
Q  369 atgactttgattccatatt 387  Q
    |||||| ||||| ||||||    
T  7939 atgactatgatttcatatt 7921  T

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Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 34355414 - 34355318
Alignment:
Q  256 tttcttggtgcagacttttgtatattttttccttttgataaaaatgttctctatgatttggcatttttattgtgttgattttcacctttcattactt 352  Q
    |||||||||||| ||||||||||||| ||| |||||||| | |||||||||||||||||  |||||| ||||| ||||| | ||||||| |||||||    
T  34355414 tttcttggtgcaaacttttgtatattattttcttttgattacaatgttctctatgatttatcattttaattgtattgatatccacctttgattactt 34355318  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 3622076 - 3622146
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatatt 387  Q
    ||||||||||||||| |||| ||||||| |||||||||||  ||| || ||||||| ||||||||| ||||    
T  3622076 catttttattgtgtttatttccacctttgattactttcacaaaatgtagtttatgagtttgattccgtatt 3622146  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 293
Target Start/End: Complemental strand, 8564482 - 8564411
Alignment:
Q  224 atagatttaataacccttgcagttaagaccaatttctt-ggtgcagacttttgtatat-tttttccttttga 293  Q
    |||||||||| |||| |||| |||| ||||||||| || ||||||||||||||||||| ||||| |||||||    
T  8564482 atagatttaacaacctttgcggttaggaccaatttttttggtgcagacttttgtatatattttttcttttga 8564411  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 17724653 - 17724580
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    |||||| |||||||| |||||||| ||| |||||||||||  |||||||||||||||||| |||||||||||||    
T  17724653 cattttgattgtgtttattttcacgtttgattactttcacataatttaatttatgactttaattccatattcat 17724580  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 300 - 390
Target Start/End: Original strand, 2792347 - 2792436
Alignment:
Q  300 tgttctctatgatttggcatttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||| |||  |||||||||| ||||||||  ||||||| ||||||| |||| |||||||||||  |||||||||||||||||||    
T  2792347 tgttctctatggtttatcatttttattttgttgattc-cacctttgattacttccactaaatttaatttacaactttgattccatattcat 2792436  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 44164736 - 44164809
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||| ||  ||| |||| ||||||  ||||||||||||||||||||||||||||||||    
T  44164736 catttttattgtgtttatttccatgtttgattattttcacataatttaatttatgactttgattccatattcat 44164809  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 25086110 - 25086181
Alignment:
Q  319 tttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    |||||||||||||||||| |||| |||||| ||| |||||||||||||| ||||| ||| ||||||||||||    
T  25086110 tttttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcat 25086181  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 390
Target Start/End: Original strand, 25144080 - 25144151
Alignment:
Q  319 tttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    |||||||||||||||||| |||| |||||| ||| |||||||||||||| ||||| ||| ||||||||||||    
T  25144080 tttttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcat 25144151  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 390
Target Start/End: Complemental strand, 5586067 - 5585994
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||| ||  ||| ||||||||||| ||||||| ||||||| |||||||| ||||||||    
T  5586067 catttttattgtgtttatttccatgtttgattactttcacagaatttagtttatgagtttgattctatattcat 5585994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 7778949 - 7779020
Alignment:
Q  224 atagatttaataacccttgcagttaagaccaatttctt-ggtgcagacttttgtatat-tttttccttttga 293  Q
    |||||||||| |||| ||||||||| ||||||||| || ||||||||||||||||||| ||||| |||||||    
T  7778949 atagatttaacaacctttgcagttacgaccaatttttttggtgcagacttttgtatatattttttcttttga 7779020  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 22209520 - 22209593
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||||||  ||| |||||||||||  |||||||||||||| |||||||| ||||||||    
T  22209520 catttttattgtgtttattttcatgtttgattactttcacataatttaatttatgaatttgattcgatattcat 22209593  T

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Target: scaffold0016 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 91179 - 91121
Alignment:
Q  256 tttcttggtgcagacttttgtatattttttccttttgataaaaatgttctctatgattt 314  Q
    |||||||||||| ||||||||||||| |||||||||||| |  ||||||||||||||||    
T  91179 tttcttggtgcaaacttttgtatattatttccttttgattatgatgttctctatgattt 91121  T

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Target: scaffold0016; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 91530 - 91580
Alignment:
Q  264 tgcagacttttgtatattttttccttttgataaaaatgttctctatgattt 314  Q
    |||| ||||||||||||| |||||||||||| |  ||||||||||||||||    
T  91530 tgcaaacttttgtatattatttccttttgattacgatgttctctatgattt 91580  T

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Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 390
Target Start/End: Original strand, 44324 - 44397
Alignment:
Q  317 catttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgattccatattcat 390  Q
    ||||||||||||||| |||| ||| ||| |||||||||||   ||||||||||||| ||||||| | |||||||    
T  44324 catttttattgtgtttatttccacgtttgattactttcacattatttaatttatgagtttgatttcctattcat 44397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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