View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16096_high_1 (Length: 496)

Name: NF16096_high_1
Description: NF16096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16096_high_1
NF16096_high_1
[»] chr6 (5 HSPs)
chr6 (295-489)||(6127508-6127702)
chr6 (290-351)||(8978605-8978666)
chr6 (284-351)||(8508317-8508384)
chr6 (288-351)||(16338168-16338231)
chr6 (284-337)||(3358960-3359013)
[»] chr3 (9 HSPs)
chr3 (353-489)||(13220669-13220804)
chr3 (284-351)||(47733750-47733817)
chr3 (284-351)||(20044721-20044788)
chr3 (284-351)||(105908-105975)
chr3 (284-341)||(550395-550452)
chr3 (284-352)||(566337-566405)
chr3 (284-332)||(19861171-19861219)
chr3 (284-332)||(40013164-40013212)
chr3 (299-351)||(53293276-53293328)
[»] chr7 (11 HSPs)
chr7 (353-489)||(13107056-13107191)
chr7 (284-352)||(10623987-10624055)
chr7 (284-351)||(21954683-21954750)
chr7 (284-351)||(38277033-38277100)
chr7 (288-351)||(46881372-46881435)
chr7 (290-331)||(40016746-40016787)
chr7 (284-351)||(14657716-14657783)
chr7 (284-351)||(29352415-29352482)
chr7 (291-351)||(31724816-31724876)
chr7 (284-328)||(32571736-32571780)
chr7 (284-332)||(42644861-42644909)
[»] chr8 (5 HSPs)
chr8 (353-434)||(34190233-34190314)
chr8 (284-351)||(6219969-6220036)
chr8 (284-351)||(10334365-10334432)
chr8 (284-351)||(10633054-10633121)
chr8 (288-347)||(40907885-40907944)
[»] scaffold0238 (1 HSPs)
scaffold0238 (284-351)||(15545-15612)
[»] chr4 (10 HSPs)
chr4 (290-351)||(18995481-18995542)
chr4 (284-352)||(22121635-22121703)
chr4 (289-335)||(45756818-45756864)
chr4 (284-351)||(5814535-5814602)
chr4 (284-351)||(8712719-8712786)
chr4 (284-352)||(41837520-41837588)
chr4 (284-351)||(24789378-24789445)
chr4 (284-351)||(24818814-24818881)
chr4 (286-351)||(3159185-3159250)
chr4 (291-351)||(55600402-55600462)
[»] scaffold0006 (1 HSPs)
scaffold0006 (284-351)||(35860-35927)
[»] chr2 (8 HSPs)
chr2 (284-350)||(20124635-20124701)
chr2 (284-352)||(7581951-7582019)
chr2 (284-351)||(13548766-13548833)
chr2 (284-351)||(15920063-15920130)
chr2 (284-351)||(5754477-5754544)
chr2 (284-335)||(17792663-17792714)
chr2 (284-351)||(40039173-40039240)
chr2 (290-351)||(45694311-45694372)
[»] chr5 (9 HSPs)
chr5 (290-351)||(12215327-12215388)
chr5 (284-352)||(25962108-25962176)
chr5 (284-352)||(26905501-26905569)
chr5 (284-351)||(39915682-39915749)
chr5 (284-351)||(7151000-7151067)
chr5 (319-351)||(6639218-6639250)
chr5 (284-312)||(26294961-26294989)
chr5 (284-348)||(35275854-35275918)
chr5 (284-348)||(39416119-39416183)
[»] scaffold0886 (1 HSPs)
scaffold0886 (284-331)||(3626-3673)
[»] chr1 (11 HSPs)
chr1 (284-351)||(10304767-10304834)
chr1 (290-347)||(3101862-3101919)
chr1 (284-352)||(32878897-32878965)
chr1 (288-351)||(12871814-12871877)
chr1 (284-347)||(26097874-26097937)
chr1 (288-335)||(29551630-29551677)
chr1 (288-351)||(47551288-47551351)
chr1 (284-351)||(49772273-49772340)
chr1 (291-349)||(8960718-8960775)
chr1 (284-346)||(18889293-18889355)
chr1 (319-351)||(8937853-8937885)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 9e-99; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 295 - 489
Target Start/End: Original strand, 6127508 - 6127702
Alignment:
Q  295 aatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgtctctgcttctccctctcaatcaaacttttcgttgccatgatg 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||    
T  6127508 aatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgcctcttcttctccctctcaatcaaactttttgttgccatgatg 6127607  T
Q  395 gttcatttcctattagtatcaatgatagaagtcggatcctggattgtagaaatagaagaaggtggtttcccttcttcatacaaagaaatgatatt 489  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6127608 gttcatttcctattagtatcaatgatagaagtcggatcctggattgtagaaatagaagaaggtggtttcccttcttcatacaaagaaatgatatt 6127702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 8978666 - 8978605
Alignment:
Q  290 gttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||| ||||||||||| ||| | |||||||||||||||| ||| || ||||||||||||    
T  8978666 gttgaaagattagttttgatcaagtgcatattcaatcaatgatttttgcatcgtcaacgttg 8978605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 8508317 - 8508384
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||| || ||| ||||||||||| ||| | || ||| ||||||||||||| |||||||||||||||    
T  8508317 attcagattaaaagattagttttgatcaagtgcagattgaatcaatgacttttgcgtcgtcaacgttg 8508384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Complemental strand, 16338231 - 16338168
Alignment:
Q  288 aggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||| |||||||||||| |  | || |||||||||||||||||| ||||||| ||||||    
T  16338231 aggttgaaagattagttttgagtaggtgcaaattcaatcaatgactttaacgtcgtcgacgttg 16338168  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 3358960 - 3359013
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttag 337  Q
    ||||||||||||| | ||||||||| ||||| ||||| |||||||| |||||||    
T  3358960 attcaggttgaaagagtagttttgatcaaatgcatatccaatcaataactttag 3359013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 121; Significance: 9e-62; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 353 - 489
Target Start/End: Complemental strand, 13220804 - 13220669
Alignment:
Q  353 ctctgcttctccctctcaatcaaacttttcgttgccatgatggttcatttcctattagtatcaatgatagaagtcggatcctggattgtagaaatagaag 452  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13220804 ctcttcttctccctctcaatcaaacttttcgttgccatgatggttcatttcctattagtatcaatgatagaagtcggatcctgga-tgtagaaatagaag 13220706  T
Q  453 aaggtggtttcccttcttcatacaaagaaatgatatt 489  Q
    |||||||||||||||||||||||||||||||| ||||    
T  13220705 aaggtggtttcccttcttcatacaaagaaatgctatt 13220669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 47733817 - 47733750
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||    
T  47733817 attcaggttgaaatattagttttgagcaaatgcatattcaatcaatgactttggcgtcgtcaaagttg 47733750  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 20044788 - 20044721
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||||||| || ||||||||||||||| | |||||||||||||| | |||  ||||||||||||||    
T  20044788 attcaggttggaagattagttttgagcaagtgcatattcaatcaatcattttgacgtcgtcaacgttg 20044721  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 105975 - 105908
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||||||| | || || | |||||||||||| | |||||||||||||    
T  105975 attcaggttgaaagattagctttgagcaagtgcaaatccgatcaatgacttttgtgtcgtcaacgttg 105908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 550395 - 550452
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtc 341  Q
    |||||| |||||||||||| ||| | ||| | |||||||||||||||||||| |||||    
T  550395 attcagattgaaatattagctttcatcaattgcatattcaatcaatgacttttgcgtc 550452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 566337 - 566405
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||||||||||| | ||| ||| | ||| | || ||||||||||||||||| ||||||||||| ||||    
T  566337 attcaggttgaaagactagcttttatcaattgcagattcaatcaatgacttttgcgtcgtcaactttgt 566405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 19861219 - 19861171
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgac 332  Q
    ||||||||||||||||||  ||||||||| | ||||||| |||||||||    
T  19861219 attcaggttgaaatattaactttgagcaagtgcatattcgatcaatgac 19861171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 40013212 - 40013164
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgac 332  Q
    ||||||||||||| ||||| ||||||||| | || ||||||||||||||    
T  40013212 attcaggttgaaagattagctttgagcaagtgcagattcaatcaatgac 40013164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 299 - 351
Target Start/End: Original strand, 53293276 - 53293328
Alignment:
Q  299 ttagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||||||| ||| | |||||||||||||||| |||  ||||||||||||||    
T  53293276 ttagttttgatcaagtgcatattcaatcaatgattttgacgtcgtcaacgttg 53293328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 353 - 489
Target Start/End: Complemental strand, 13107191 - 13107056
Alignment:
Q  353 ctctgcttctccctctcaatcaaacttttcgtt-gccatgatggttcatttcctattagtatcaatgatagaagtcggatcctggattgtagaaatagaa 451  Q
    |||| ||||||||||||||||||||||||  || ||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  13107191 ctcttcttctccctctcaatcaaactttttttttgccatgatggt-catt-cctattagtatcaatgatagaagtcggatcctgggatgtagaaatagaa 13107094  T
Q  452 gaaggtggtttcccttcttcatacaaagaaatgatatt 489  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  13107093 gaaggtggtttcccttcttcatacaaagaaatgctatt 13107056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 10623987 - 10624055
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||| ||||||| ||||| ||||| ||| |||| ||||||||||||||||| | ||||||||||||||    
T  10623987 attcaagttgaaagattagctttgatcaagtacaaattcaatcaatgacttttgtgtcgtcaacgttgt 10624055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 21954750 - 21954683
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||||||| | || || | |||||||||||| |||||||||||||||    
T  21954750 attcaggttgaaagattagctttgagcaagtgcaaatccgatcaatgactttggcgtcgtcaacgttg 21954683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 38277033 - 38277100
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||| ||||||||||||| ||||||||| | || || | |||||||||||| |||||||||||||||    
T  38277033 attcatgttgaaatattagctttgagcaagttcaaatccgatcaatgactttggcgtcgtcaacgttg 38277100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 46881372 - 46881435
Alignment:
Q  288 aggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||||||| ||| | || ||||||||||||| ||| || ||||||||||||    
T  46881372 aggttgaaatattagttttgatcaagttcaaattcaatcaatgatttttgcatcgtcaacgttg 46881435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 40016787 - 40016746
Alignment:
Q  290 gttgaaatattagttttgagcaaatacatattcaatcaatga 331  Q
    ||||||||||||||||||| ||||| ||||||||||||||||    
T  40016787 gttgaaatattagttttgaacaaatgcatattcaatcaatga 40016746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 14657783 - 14657716
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||| |||||| ||||  ||||||||||| ||||||| |||||||||||| ||||| |||| ||||    
T  14657783 attcagattgaaagattaactttgagcaaatgcatattcgatcaatgactttggcgtcatcaatgttg 14657716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 29352415 - 29352482
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| |||| |||| |  | |||| |||||||||||| |||||||||||||||    
T  29352415 attcaggttgaaagattagctttgtgcaagtgtagattcgatcaatgacttttgcgtcgtcaacgttg 29352482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 351
Target Start/End: Original strand, 31724816 - 31724876
Alignment:
Q  291 ttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||||| |||||||||  |||| || ||||||||||||| ||| |||| ||||||||||    
T  31724816 ttgaaataatagttttgattaaatgcagattcaatcaatgaattttgcgttgtcaacgttg 31724876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 328
Target Start/End: Complemental strand, 32571780 - 32571736
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaa 328  Q
    ||||||||| ||| ||||||||||||||||| || ||||||||||    
T  32571780 attcaggttaaaaaattagttttgagcaaatgcagattcaatcaa 32571736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 42644861 - 42644909
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgac 332  Q
    ||||||||||||||||||| ||||||||| |||| || | |||||||||    
T  42644861 attcaggttgaaatattagctttgagcaagtacagatccgatcaatgac 42644909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 4e-36; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 353 - 434
Target Start/End: Complemental strand, 34190314 - 34190233
Alignment:
Q  353 ctctgcttctccctctcaatcaaacttttcgttgccatgatggttcatttcctattagtatcaatgatagaagtcggatcct 434  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34190314 ctcttcttctccctctcaatcaaacttttcgttgccatgatggttcatttcctattagtatcaatgatagaagtcggatcct 34190233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 6220036 - 6219969
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| |||||| |||||||| | || ||||||||||||| ||| ||||| |||||||||    
T  6220036 attcaggttgaaagattagtcttgagcaagtgcagattcaatcaatgattttggcgtcttcaacgttg 6219969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 10334365 - 10334432
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||| |||||||||||| ||||||||||| || || | |||||||||||| || ||||||||||||    
T  10334365 attcagattgaaatattagctttgagcaaatgcagatccgatcaatgactttggcatcgtcaacgttg 10334432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 10633121 - 10633054
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||| ||| |  | ||||||||||||| ||| |||||||||||||||    
T  10633121 attcaggttgaaagattagctttgatcaagtgtagattcaatcaatgatttttgcgtcgtcaacgttg 10633054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 40907885 - 40907944
Alignment:
Q  288 aggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaac 347  Q
    |||||| || ||||||||||| |||||||| ||||||||||| |||||  ||||||||||    
T  40907885 aggttgtaaaattagttttgatcaaatacaaattcaatcaataactttgacgtcgtcaac 40907944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 15612 - 15545
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||||||||||| ||| |||| |||||| |||||| ||| |||||||||||||||    
T  15612 attcaggttgaaatattagttttgatcaagtacagattcaaccaatgagttttgcgtcgtcaacgttg 15545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 18995481 - 18995542
Alignment:
Q  290 gttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||| ||||||||||| ||| |||| ||||||||||||||||| |||||||||||||||    
T  18995481 gttgaaagattagttttgatcaagtacagattcaatcaatgacttttgcgtcgtcaacgttg 18995542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 22121635 - 22121703
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||| ||||||||||||| ||||||||| | |||||| ||||||||||||| |||| |||||||||||    
T  22121635 attcaagttgaaatattagctttgagcaagtgcatatttaatcaatgacttttgcgttgtcaacgttgt 22121703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 289 - 335
Target Start/End: Original strand, 45756818 - 45756864
Alignment:
Q  289 ggttgaaatattagttttgagcaaatacatattcaatcaatgacttt 335  Q
    |||||||||||||||||||||||||| || |||||||||||||||||    
T  45756818 ggttgaaatattagttttgagcaaattcagattcaatcaatgacttt 45756864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 5814535 - 5814602
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||||||| | || |||| |||||||||||| ||||| |||||||||    
T  5814535 attcaggttgaaagattagctttgagcaagtgcagattcgatcaatgactttggcgtcatcaacgttg 5814602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 8712719 - 8712786
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||||||| | || || | |||||||||||| |||||||||||||||    
T  8712719 attcaggttgaaagattagctttgagcaagtgcagatccgatcaatgactttggcgtcgtcaacgttg 8712786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 41837520 - 41837588
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||||||| |||| |||| ||| ||||| |  ||||||||||||||| ||| ||||||||||||||||    
T  41837520 attcaggttaaaatgttagcttttagcaagtggatattcaatcaatgattttggcgtcgtcaacgttgt 41837588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 24789378 - 24789445
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||| ||||| || |||||| ||||||||||  | ||||||||||||    
T  24789378 attcaggttgaaagattagctttgatcaaatgcagattcaaccaatgacttttacttcgtcaacgttg 24789445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 24818881 - 24818814
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||| ||||| || |||||| ||||||||||  | ||||||||||||    
T  24818881 attcaggttgaaagattagctttgatcaaatgcagattcaaccaatgacttttacttcgtcaacgttg 24818814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 3159185 - 3159250
Alignment:
Q  286 tcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||||||||  |||| ||||||||| | ||||| | |||||||| ||||||||| |||||||||    
T  3159185 tcaggttgaaaggttagctttgagcaagtgcatatccgatcaatgattttagcgtcatcaacgttg 3159250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 351
Target Start/End: Complemental strand, 55600462 - 55600402
Alignment:
Q  291 ttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    |||||| ||||| |||||||||   || || |||||||||| |||||||||||||||||||    
T  55600462 ttgaaagattagctttgagcaagcgcagatccaatcaatgattttagcgtcgtcaacgttg 55600402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 35860 - 35927
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||||||| ||| || |||| |||||||    
T  35860 attcaggttgaaatattagttttgatcaagtacagattcaatcaatgatttttgcatcgttaacgttg 35927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 284 - 350
Target Start/End: Complemental strand, 20124701 - 20124635
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgtt 350  Q
    ||||||||||||| ||||| ||||||||| | || |||| |||||||||||| ||||||||||||||    
T  20124701 attcaggttgaaagattagctttgagcaagtgcaaattcgatcaatgactttggcgtcgtcaacgtt 20124635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 7582019 - 7581951
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||||||||||||||||  ||||||||| | || |||||||||| ||||||  |||||||||||||||    
T  7582019 attcaggttgaaatattatctttgagcaagtgcaaattcaatcaacgactttgacgtcgtcaacgttgt 7581951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 13548833 - 13548766
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||| ||||| || ||||||||||||||||| || | ||||||||||    
T  13548833 attcaggttgaaagattagctttgatcaaatgcagattcaatcaatgacttttgcattgtcaacgttg 13548766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 15920063 - 15920130
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||||| |||| |||| | || || | |||||||||||| |||||||||||||||    
T  15920063 attcaggttgaaatattagctttgtgcaagtgcagatccgatcaatgactttggcgtcgtcaacgttg 15920130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 5754477 - 5754544
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||||||| | || || | |||||||||||| | |||||||||||||    
T  5754477 attcaggttgaaagattagctttgagcaagtgcagatccgatcaatgactttggtgtcgtcaacgttg 5754544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 335
Target Start/End: Original strand, 17792663 - 17792714
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgacttt 335  Q
    ||||| ||||||| ||||||||||| ||||| || |||||||||||||||||    
T  17792663 attcatgttgaaagattagttttgatcaaatgcagattcaatcaatgacttt 17792714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Complemental strand, 40039240 - 40039173
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| |||||| |||| ||| | || ||||||||||||||||| || || |||||||||    
T  40039240 attcaggttgaaaaattagtattgatcaagtgcagattcaatcaatgacttttgcatcatcaacgttg 40039173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 351
Target Start/End: Complemental strand, 45694372 - 45694311
Alignment:
Q  290 gttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||| ||||  ||||||||||| || ||  |||||||||||||| ||||||||||||||    
T  45694372 gttgaaagattatctttgagcaaatgcagatctaatcaatgactttaacgtcgtcaacgttg 45694311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 351
Target Start/End: Original strand, 12215327 - 12215388
Alignment:
Q  290 gttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||| ||||||||||||||| | ||||| | |||||||||||| |||||||||||||||    
T  12215327 gttgaaagattagttttgagcaagtgcatatccgatcaatgacttttgcgtcgtcaacgttg 12215388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 25962108 - 25962176
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||||||||||| ||||||||||||||| | || ||   |||||||||||| ||||||||||||||||    
T  25962108 attcaggttgaaagattagttttgagcaagtgcagatctgatcaatgacttttgcgtcgtcaacgttgt 25962176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 352
Target Start/End: Complemental strand, 26905569 - 26905501
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    |||||||| |||||||||  |||||| |||| || ||||||||||||||||||| || |||||||||||    
T  26905569 attcaggtggaaatattatctttgaggaaatgcagattcaatcaatgactttagtgttgtcaacgttgt 26905501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 39915682 - 39915749
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| ||||| ||||||||| | ||||| |||||||| |||||  ||||||||||||||    
T  39915682 attcaggttgaaagattagctttgagcaagtgcatatccaatcaataactttgacgtcgtcaacgttg 39915749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 7151000 - 7151067
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||| | | |||||||| || |||| |||| |||||||||||| ||||| |||||||||    
T  7151000 attcaggttgaaagactggttttgagtaagtacaaattcgatcaatgactttggcgtcatcaacgttg 7151067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 6639218 - 6639250
Alignment:
Q  319 attcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||| |||||||||||||||    
T  6639218 attcaatcaatgacttttgcgtcgtcaacgttg 6639250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 312
Target Start/End: Complemental strand, 26294989 - 26294961
Alignment:
Q  284 attcaggttgaaatattagttttgagcaa 312  Q
    |||||||||||||||||||||||||||||    
T  26294989 attcaggttgaaatattagttttgagcaa 26294961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 35275918 - 35275854
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacg 348  Q
    |||| ||||||||  |||| ||||||||| |||| || |||||||| ||||| ||||||||||||    
T  35275918 attccggttgaaaggttagctttgagcaagtacagatccaatcaataactttggcgtcgtcaacg 35275854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 348
Target Start/End: Complemental strand, 39416183 - 39416119
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacg 348  Q
    ||||||||||||| ||||| ||||  |||||  | ||||||||||||| ||| ||||||||||||    
T  39416183 attcaggttgaaagattagctttgttcaaatgtaaattcaatcaatgatttttgcgtcgtcaacg 39416119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0886 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0886
Description:

Target: scaffold0886; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 3673 - 3626
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatga 331  Q
    ||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  3673 attcaggttgaaatattagttttgatcaagtacagattcaatcaatga 3626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 10304767 - 10304834
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||| ||||||||||||| |||||| || |  | |||||||||||||||||||| ||||||||||||    
T  10304767 attcaagttgaaatattagctttgagaaagtggagattcaatcaatgactttagcatcgtcaacgttg 10304834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 3101862 - 3101919
Alignment:
Q  290 gttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaac 347  Q
    ||||||||||||  ||||||||| | |||||||||| ||||||||| |||||||||||    
T  3101862 gttgaaatattaactttgagcaagtgcatattcaattaatgactttggcgtcgtcaac 3101919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 32878897 - 32878965
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttgt 352  Q
    ||||||||||||| ||||| ||||||||| | || || | |||||||||||| | ||||||||||||||    
T  32878897 attcaggttgaaagattagctttgagcaagtgcagatccgatcaatgactttggtgtcgtcaacgttgt 32878965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 12871814 - 12871877
Alignment:
Q  288 aggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||| ||||| ||||||||| | || |||| |||||||||||| || ||||||||||||    
T  12871814 aggttgaaagattagctttgagcaagtgcagattcgatcaatgactttggcatcgtcaacgttg 12871877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 347
Target Start/End: Complemental strand, 26097937 - 26097874
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaac 347  Q
    ||||||||||||| ||||| ||||||||| | || |||| || ||||||||| |||||||||||    
T  26097937 attcaggttgaaaaattagctttgagcaagtgcagattccattaatgacttttgcgtcgtcaac 26097874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 29551677 - 29551630
Alignment:
Q  288 aggttgaaatattagttttgagcaaatacatattcaatcaatgacttt 335  Q
    ||||||||||||||||||||| ||| | ||||||||||||| ||||||    
T  29551677 aggttgaaatattagttttgatcaagtgcatattcaatcaaagacttt 29551630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 47551288 - 47551351
Alignment:
Q  288 aggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||| ||||| ||||||||| | || || ||||||||||||||  ||||||||||||||    
T  47551288 aggttgaaagattagctttgagcaagtgcagatccaatcaatgactttgacgtcgtcaacgttg 47551351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 351
Target Start/End: Original strand, 49772273 - 49772340
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||| ||||||||||||| ||||| ||||| || ||||||  ||||||||| |||||||||| ||||    
T  49772273 attcacgttgaaatattagctttgatcaaatgcagattcaactaatgacttttgcgtcgtcaatgttg 49772340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 8960718 - 8960775
Alignment:
Q  291 ttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaacgt 349  Q
    ||||||||||||||| |||||   |||||||||||||||||||||  ||||||||||||    
T  8960718 ttgaaatattagttt-gagcattgacatattcaatcaatgactttgacgtcgtcaacgt 8960775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 18889293 - 18889355
Alignment:
Q  284 attcaggttgaaatattagttttgagcaaatacatattcaatcaatgactttagcgtcgtcaa 346  Q
    ||||||||  ||| ||||||||||| ||| | |||||||||||||||||||| || |||||||    
T  18889293 attcaggtcaaaagattagttttgatcaagtgcatattcaatcaatgacttttgcatcgtcaa 18889355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 8937853 - 8937885
Alignment:
Q  319 attcaatcaatgactttagcgtcgtcaacgttg 351  Q
    ||||||||||||||||| |||||||||||||||    
T  8937853 attcaatcaatgactttggcgtcgtcaacgttg 8937885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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