View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16096_high_6 (Length: 313)

Name: NF16096_high_6
Description: NF16096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16096_high_6
NF16096_high_6
[»] chr7 (13 HSPs)
chr7 (121-292)||(44726584-44726758)
chr7 (1-119)||(44727045-44727163)
chr7 (241-294)||(9680508-9680561)
chr7 (249-294)||(24815612-24815657)
chr7 (241-292)||(21679725-21679776)
chr7 (255-292)||(7092763-7092800)
chr7 (255-292)||(7349862-7349899)
chr7 (255-292)||(20299123-20299160)
chr7 (255-292)||(28487217-28487254)
chr7 (255-292)||(31156495-31156532)
chr7 (255-292)||(38395954-38395991)
chr7 (255-292)||(7470616-7470653)
chr7 (262-294)||(44011290-44011322)
[»] chr3 (13 HSPs)
chr3 (241-294)||(28100579-28100632)
chr3 (241-292)||(23636695-23636746)
chr3 (241-292)||(25635090-25635141)
chr3 (241-294)||(890289-890342)
chr3 (241-294)||(43421952-43422005)
chr3 (241-292)||(28137812-28137863)
chr3 (241-292)||(3306486-3306537)
chr3 (256-294)||(14634699-14634737)
chr3 (255-288)||(1619199-1619232)
chr3 (255-294)||(42991919-42991958)
chr3 (255-292)||(457918-457955)
chr3 (262-294)||(4386466-4386498)
chr3 (262-294)||(15824151-15824183)
[»] chr6 (6 HSPs)
chr6 (241-294)||(3396061-3396114)
chr6 (241-292)||(3630403-3630454)
chr6 (248-291)||(28038244-28038287)
chr6 (241-288)||(26944898-26944945)
chr6 (260-292)||(19696243-19696275)
chr6 (241-294)||(11138125-11138178)
[»] chr1 (12 HSPs)
chr1 (241-292)||(50077174-50077225)
chr1 (241-292)||(8347812-8347863)
chr1 (241-292)||(31423416-31423467)
chr1 (241-290)||(8954347-8954396)
chr1 (241-290)||(25249035-25249084)
chr1 (241-292)||(16430792-16430842)
chr1 (256-294)||(25127561-25127599)
chr1 (255-292)||(27337527-27337564)
chr1 (255-292)||(31736110-31736147)
chr1 (256-292)||(155396-155432)
chr1 (256-292)||(13125992-13126028)
chr1 (257-292)||(6997182-6997217)
[»] chr4 (10 HSPs)
chr4 (241-294)||(36380127-36380180)
chr4 (242-289)||(18535319-18535366)
chr4 (241-292)||(47564466-47564517)
chr4 (241-283)||(27498942-27498984)
chr4 (249-294)||(12396394-12396439)
chr4 (249-294)||(12401336-12401381)
chr4 (242-292)||(16455017-16455067)
chr4 (255-294)||(14788016-14788055)
chr4 (255-292)||(5100711-5100748)
chr4 (262-294)||(3792451-3792483)
[»] chr5 (4 HSPs)
chr5 (241-289)||(20044728-20044776)
chr5 (255-294)||(27912185-27912224)
chr5 (255-292)||(18468666-18468703)
chr5 (255-292)||(26098836-26098873)
[»] chr8 (5 HSPs)
chr8 (241-292)||(21482091-21482142)
chr8 (241-293)||(31574230-31574282)
chr8 (255-294)||(41384459-41384498)
chr8 (262-294)||(17849511-17849543)
chr8 (262-292)||(26268787-26268817)
[»] chr2 (3 HSPs)
chr2 (241-291)||(31733265-31733315)
chr2 (255-292)||(35216179-35216216)
chr2 (262-294)||(13828840-13828872)
[»] scaffold1674 (1 HSPs)
scaffold1674 (255-292)||(90-127)
[»] scaffold0005 (1 HSPs)
scaffold0005 (255-294)||(51675-51714)
[»] scaffold0011 (1 HSPs)
scaffold0011 (260-294)||(35547-35581)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 121 - 292
Target Start/End: Complemental strand, 44726758 - 44726584
Alignment:
Q  121 aataaactgcacattagcagaaaatatacctttgaatatatat---tttttaatttatcacttaaacaatgttatttacaatcaagaatttgaattacat 217  Q
    |||||||||||||||| |||||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  44726758 aataaactgcacattaacagaaaatatacctttcaatatatatatatttttaatttatcacttaaacaatgttatttacaataaagaatttgaattacat 44726659  T
Q  218 tctaaaattacattattcgcacatttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44726658 tctaaaattacattattcgcacatttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 44726584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 44727163 - 44727045
Alignment:
Q  1 aaaaatcaccacctttgaaggagtaaattgcataaaagcaattatcccacaacaaagcaaaaagatctacaaattccaccgccaccaaggaaggtgataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44727163 aaaaatcaccacctttgaaggagtaaattgcataaaagcaattatcccacagcaaagcaaaaagatctacaaattccaccgccaccaaggaaggtgataa 44727064  T
Q  101 caaaatattgctaaggtag 119  Q
    |||||||||||||||||||    
T  44727063 caaaatattgctaaggtag 44727045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 9680561 - 9680508
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  9680561 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 9680508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 24815612 - 24815657
Alignment:
Q  249 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  24815612 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 24815657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 21679776 - 21679725
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  21679776 tttgaggcactttcacaataatctccaccttgactttaaattagtgatgatg 21679725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 7092763 - 7092800
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7092763 acaacattctccaccttgactctaaattagtgatgatg 7092800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 7349862 - 7349899
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  7349862 acaacattctccaccttgactctaaattagtgatgatg 7349899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 20299160 - 20299123
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  20299160 acaacattctccaccttgactctaaattagtgatgatg 20299123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 28487254 - 28487217
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  28487254 acaacattctccaccttgactctaaattagtgatgatg 28487217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 31156495 - 31156532
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31156495 acaacattctccaccttgactctaaattagtgatgatg 31156532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 38395991 - 38395954
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  38395991 acaacattctccaccttgactctaaattagtgatgatg 38395954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 7470616 - 7470653
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  7470616 acaacattctccaccttgactctaaatttgtgatgatg 7470653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 44011290 - 44011322
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||| |||||||||||||    
T  44011290 tctccaccttgactctaaaatagtgatgatgtc 44011322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 28100579 - 28100632
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28100579 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 28100632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 23636746 - 23636695
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  23636746 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 23636695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 25635141 - 25635090
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  25635141 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 25635090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 890289 - 890342
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  890289 tttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtc 890342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 43421952 - 43422005
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  43421952 tttgaggcactttcacaacaatttccaccttgactccaaattagtgatgatgtc 43422005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 28137812 - 28137863
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28137812 tttgaggcactttcacaacaatctccaccttgactttaaattaatgatgatg 28137863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 3306537 - 3306486
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  3306537 tttgagtcactttcacaacattctccaccttaactctaaattagtgatgatg 3306486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 14634699 - 14634737
Alignment:
Q  256 caacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14634699 caacaatctccaccttgactctaaattagtgatgatgtc 14634737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 1619199 - 1619232
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgat 288  Q
    ||||||||||||||||||||||||||||||||||    
T  1619199 acaacaatctccaccttgactctaaattagtgat 1619232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 42991958 - 42991919
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| ||| |||||||||||||||||||||||||||||    
T  42991958 acaacattcttcaccttgactctaaattagtgatgatgtc 42991919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 457955 - 457918
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  457955 acaacattctccaccttgactctaaattagtaatgatg 457918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 4386498 - 4386466
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||| |||||||||||    
T  4386498 tctccaccttgactctaaattggtgatgatgtc 4386466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 15824151 - 15824183
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||| |||||||||||||||||||||||||    
T  15824151 tctccacattgactctaaattagtgatgatgtc 15824183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 3396114 - 3396061
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3396114 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 3396061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 3630403 - 3630454
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3630403 tttgaggcactttcacaacaatctccaccttgactcaaaattagtgatgatg 3630454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 248 - 291
Target Start/End: Original strand, 28038244 - 28038287
Alignment:
Q  248 cactttcacaacaatctccaccttgactctaaattagtgatgat 291  Q
    |||||||||||||||||||||||||||| |||||||||||||||    
T  28038244 cactttcacaacaatctccaccttgactttaaattagtgatgat 28038287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 26944945 - 26944898
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgat 288  Q
    |||||| ||||||||||||||| ||||||||| |||||||||||||||    
T  26944945 tttgagtcactttcacaacaatttccaccttgtctctaaattagtgat 26944898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 19696275 - 19696243
Alignment:
Q  260 aatctccaccttgactctaaattagtgatgatg 292  Q
    |||||||||||||||||||||||||||||||||    
T  19696275 aatctccaccttgactctaaattagtgatgatg 19696243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 11138178 - 11138125
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||  |||||| |||||||||| |||||||||| |||||||||||    
T  11138178 tttgagtcacttctacaacattctccaccttaactctaaatttgtgatgatgtc 11138125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 50077174 - 50077225
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  50077174 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatgatg 50077225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 8347812 - 8347863
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  8347812 tttgagtcactttcacaataatctccaccttgactctaaattagtgatgatg 8347863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 31423416 - 31423467
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  31423416 tttgagtcactttcacaacaatcttcaccttgactctaaattagtgatgatg 31423467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 8954396 - 8954347
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatga 290  Q
    |||||| ||||||||||||||| |||||||||||||| ||||||||||||    
T  8954396 tttgagtcactttcacaacaatttccaccttgactcttaattagtgatga 8954347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 25249035 - 25249084
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatga 290  Q
    ||||||||||| |||||||||||||| ||||||| |||||||||||||||    
T  25249035 tttgaggcactatcacaacaatctcctccttgaccctaaattagtgatga 25249084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 16430842 - 16430792
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||||||||    
T  16430842 tttgagtcactttcacaacaatctccactttgactct-aattagtgatgatg 16430792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 25127599 - 25127561
Alignment:
Q  256 caacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  25127599 caacaatctccaccttgactctaaattagttatgatgtc 25127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 27337527 - 27337564
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  27337527 acaacattctccaccttgactctaaattagtgatgatg 27337564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 31736110 - 31736147
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  31736110 acaacattctccaccttgactctaaattagtgatgatg 31736147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 155432 - 155396
Alignment:
Q  256 caacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||||||||||||||||||||||| ||||||||||    
T  155432 caacaatctccaccttgactctaaataagtgatgatg 155396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 13125992 - 13126028
Alignment:
Q  256 caacaatctccaccttgactctaaattagtgatgatg 292  Q
    ||||||||||||||||||| |||||||||||||||||    
T  13125992 caacaatctccaccttgacactaaattagtgatgatg 13126028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 292
Target Start/End: Complemental strand, 6997217 - 6997182
Alignment:
Q  257 aacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||| |||||||||||||||||||||||||||||||    
T  6997217 aacattctccaccttgactctaaattagtgatgatg 6997182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 294
Target Start/End: Complemental strand, 36380180 - 36380127
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  36380180 tttgagtcactttcataacaatctccaccttgactctaaattagtgatgatgtc 36380127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 18535319 - 18535366
Alignment:
Q  242 ttgaggcactttcacaacaatctccaccttgactctaaattagtgatg 289  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18535319 ttgagtcactttcacaacaatctccaccttgactctaaattagtgatg 18535366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 47564517 - 47564466
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  47564517 tttgaggcactttcacaacaatctccaccttgactctaagttattgatgatg 47564466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 283
Target Start/End: Complemental strand, 27498984 - 27498942
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaatta 283  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  27498984 tttgaggcactttcacaacaatctccaccttgactctaaatta 27498942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 12396394 - 12396439
Alignment:
Q  249 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12396394 actttcacaacaatctccaccttgaatctaaattagtgatgatgtc 12396439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 249 - 294
Target Start/End: Original strand, 12401336 - 12401381
Alignment:
Q  249 actttcacaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||    
T  12401336 actttcacaacaatctccaccttgaatctaaattagtgatgatgtc 12401381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 292
Target Start/End: Complemental strand, 16455067 - 16455017
Alignment:
Q  242 ttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    ||||| |||||  |||||||||||||||||||||| |||||||||||||||    
T  16455067 ttgagtcacttctacaacaatctccaccttgactccaaattagtgatgatg 16455017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 14788016 - 14788055
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  14788016 acaacattctccaccttgactctaaattagcgatgatgtc 14788055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 5100748 - 5100711
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||||||||||||||| |||||||    
T  5100748 acaacattctccaccttgactctaaattagcgatgatg 5100711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 3792483 - 3792451
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||||||| |||||||    
T  3792483 tctccaccttgactctaaattagtggtgatgtc 3792451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 20044776 - 20044728
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatg 289  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20044776 tttgagtcactttcacaacaatctccaccttgactctaaattagtgatg 20044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 27912224 - 27912185
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  27912224 acaacattctccaccttgactctaaattagtgatgatgtc 27912185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Complemental strand, 18468703 - 18468666
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  18468703 acaacattctccaccttgactctaaattagtgatgatg 18468666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 26098836 - 26098873
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  26098836 acaacattctccaccttgactctaaattagtgatgatg 26098873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 241 - 292
Target Start/End: Complemental strand, 21482142 - 21482091
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  21482142 tttgagtcactttcacaataatctccaccttgactctaaattagtgatgatg 21482091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 293
Target Start/End: Original strand, 31574230 - 31574282
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgatgt 293  Q
    |||||| ||||||||||||| ||| |||||||||||||||||||| |||||||    
T  31574230 tttgagtcactttcacaacattcttcaccttgactctaaattagtaatgatgt 31574282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 41384498 - 41384459
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  41384498 acaacattctccaccttgactctaaattagtgatgatgtc 41384459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 294
Target Start/End: Complemental strand, 17849543 - 17849511
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||||||||||||||||||||||||||||||    
T  17849543 tctccaccttgactctaaattagtgatgatgtc 17849511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 26268787 - 26268817
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatg 292  Q
    |||||||||||||||||||||||||||||||    
T  26268787 tctccaccttgactctaaattagtgatgatg 26268817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 291
Target Start/End: Original strand, 31733265 - 31733315
Alignment:
Q  241 tttgaggcactttcacaacaatctccaccttgactctaaattagtgatgat 291  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  31733265 tttgagtcactttcacaacaatctccaccttgactctaaactagtgatgat 31733315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 35216179 - 35216216
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  35216179 acaacattctccaccttgactctaaattagtgatgatg 35216216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 13828840 - 13828872
Alignment:
Q  262 tctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||||||| |||||||||||    
T  13828840 tctccaccttgactctaaatttgtgatgatgtc 13828872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1674 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold1674
Description:

Target: scaffold1674; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 90 - 127
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatg 292  Q
    |||||| |||||||||||||||||||||||||||||||    
T  90 acaacattctccaccttgactctaaattagtgatgatg 127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 51714 - 51675
Alignment:
Q  255 acaacaatctccaccttgactctaaattagtgatgatgtc 294  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  51714 acaacattctccaccttgactctaaattagcgatgatgtc 51675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 294
Target Start/End: Complemental strand, 35581 - 35547
Alignment:
Q  260 aatctccaccttgactctaaattagtgatgatgtc 294  Q
    ||||||||||||||||| |||||||||||||||||    
T  35581 aatctccaccttgactccaaattagtgatgatgtc 35547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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