View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16096_low_1 (Length: 226)
Name: NF16096_low_1
Description: NF16096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16096_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 96 - 210
Target Start/End: Original strand, 38546389 - 38546503
Alignment:
| Q |
96 |
accactccaaatccaaacaataataaaattcacacacnnnnnnntctttatctcttctctcaccctttacgtttcctcatccaccctcactttatcatca |
195 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38546389 |
accactccaaatccaaacaataataaaactcacacacaaaaaaatctttatctcttctctcaccctttacgtttcctcatccaccctcactttatcatca |
38546488 |
T |
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| Q |
196 |
caatcttcatctctg |
210 |
Q |
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||||||||||||||| |
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| T |
38546489 |
caatcttcatctctg |
38546503 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 38546294 - 38546342
Alignment:
| Q |
1 |
gttagagccaccaaacagagtttcgtcaacgtgtacaattccacaacca |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38546294 |
gttagagccaccaaacagagtttcgtcaacgtgtacaattccacaacca |
38546342 |
T |
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