View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16097_low_2 (Length: 328)
Name: NF16097_low_2
Description: NF16097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16097_low_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 47202099 - 47201789
Alignment:
| Q |
18 |
tttaatgcacgtcaattattgtgtgttctgtgaacaaacacaccacggttttctaattgtatttgttgccttcattttcgctcatatcgctccttttatg |
117 |
Q |
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| T |
47202099 |
tttaatgcacgtcaattattgtgtgttctgtgaacaaacacaccacggttttctaattgtatttgttgccttcattttcgctcatatcgctccttttatg |
47202000 |
T |
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| Q |
118 |
ttctgttttagtacatagtttcacttcacgctgaacgaacaccaaccacgtgattctgattctgacatttacccaagtacatgataaacaaacaagtaca |
217 |
Q |
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| T |
47201999 |
ttctgttttagtacatagtttcacttcacgctgaacgaacaccaaccacgtgattctgattctgacatttacccaagtacatgataaacaaacaagtaca |
47201900 |
T |
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| Q |
218 |
gtgtgtgtgttacactaaattcaacagtaccatattcttattattagtattataagaagaaacaaagtagccaacttttttcacttgtcgttcatggctt |
317 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47201899 |
gtgtgtgtgttacactaaattcaatagtaccatattcttattattagtattataagaagaaacaaagtagccaacttttttcacttgtcgttcatggctt |
47201800 |
T |
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| Q |
318 |
caacaatgatg |
328 |
Q |
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| T |
47201799 |
caacaatgatg |
47201789 |
T |
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