View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16097_low_3 (Length: 295)
Name: NF16097_low_3
Description: NF16097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16097_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 1516920 - 1517180
Alignment:
| Q |
19 |
cttaagtgctcggctcatctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggt |
118 |
Q |
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| T |
1516920 |
cttaagtgctcggctcatctttctccatcatggtcagatctgtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgaggt |
1517019 |
T |
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| Q |
119 |
atgttccataccactatggcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctctta |
218 |
Q |
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| T |
1517020 |
atgttccataccactatggcttataatattaatgatattttgctatattcccagttaaaaaaaataggattacttggtatcctgagattgtcgcctctta |
1517119 |
T |
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| Q |
219 |
tttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
279 |
Q |
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| T |
1517120 |
tttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
1517180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 2908254 - 2908515
Alignment:
| Q |
20 |
ttaagtgctcggctcatctttctccatcatggtcagatct--gtgtcgaagacttgctacatcaccattccaagtcttggcatgttgaagtgatttgagg |
117 |
Q |
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| T |
2908254 |
ttaagtgttcagctcatccttctccgttatggtcagatctttgtgtcgaagacttgctgcatcaccattccaaggcttggcatgttgaagtgatttgagg |
2908353 |
T |
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| Q |
118 |
tatgttccataccactatggcttataatattaatgatattttgctatattcccagttnnnnnnnntaggattacttggtatcctgagattgtcgcctctt |
217 |
Q |
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| T |
2908354 |
tatgcttcctaccactatggtttataatattattggcatttcgctatattcccagttaaagcaaataggattacttggtatcctgagattgtgacctctt |
2908453 |
T |
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| Q |
218 |
atttgatgaagtcggcatataggctagctacggctcatcttgtggacacaagtgaacttcat |
279 |
Q |
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| T |
2908454 |
attcgatgaagtcggcatataggctagttatcgctcattttgtggacacaagtgaacttcat |
2908515 |
T |
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