View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16098_low_1 (Length: 672)
Name: NF16098_low_1
Description: NF16098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16098_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 590; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 1 - 654
Target Start/End: Complemental strand, 15021600 - 15020947
Alignment:
| Q |
1 |
atgggaaggtgacaagactcagaaagttgctatttagagtatagcagaactcaagaaagaaggagaatttgacagagggaaaatgtgacttaattcttgc |
100 |
Q |
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| T |
15021600 |
atgggaaggtgacaagactcagaaagttgctatttagagtatagcagaactcaagaaagaaggagaatttgacagagggaaaatgtgacttaattcttgc |
15021501 |
T |
|
| Q |
101 |
ccgcctttttcattcaatcaaagttgactaaatagccttcaatcaattacgacgattcactaaagcaaaggaaattagtgaaaatgctatggcaagctaa |
200 |
Q |
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| T |
15021500 |
tcgcctttttcattcaatcaaagttgactaaatagcctacaatcaattacaatgattcactaaagcaaaggaaattagtgaaaatgctatggcaagctaa |
15021401 |
T |
|
| Q |
201 |
aggatacgcgatcccttgttgataaactagattcttgttcaccaactctgttcccatgatcccccttcatcatattgttagttttgttttttacatgaaa |
300 |
Q |
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| T |
15021400 |
aggatacgtgatcccttgttgataaactatattgttgttcaccaactctgttcccatgatcccccttcatcatattgttagttttgttttttacatgaaa |
15021301 |
T |
|
| Q |
301 |
aatgaggtgcaacattgctctataaatttctgcatgtgtcgctgcaccgttgcttaatacatcaccaatcaaaatctaaataattcataccagaaagaag |
400 |
Q |
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| T |
15021300 |
aatgaggtgcaacattgctctataaatttctgcatgtgtcgctgcaccgttgcttaatacatcaccaatcaaaatctaaataattcataccagaaagaag |
15021201 |
T |
|
| Q |
401 |
cgcatcagggatttgagaatgacttgactattccctaatcaatgtcagctttttcagaatacttcatgccttcatgatcacctatatgaccaataggtga |
500 |
Q |
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| T |
15021200 |
cgcatcagggatttgagaatgacttgactattccctaatcaatgtcagctttttcagaatacttcatgccttcatgatcacctatatgaccaataggtga |
15021101 |
T |
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| Q |
501 |
tcgtgaaaaagtgaaccattgcagctannnnnnnncaaaaaacaaggccacaatctgtttaatctcatcgcatatgacaatagactatagtacctccctt |
600 |
Q |
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| T |
15021100 |
tcgtgaaaaagtgaaccattgcagctattttttttcaaaaaacaaggccacaatctgtttaatctcatcgcatatgacaatagactatagtacctccctt |
15021001 |
T |
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| Q |
601 |
aaatcgtaaaagataggagttcccctaaaacgacaatacgtagagaacaaaagg |
654 |
Q |
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| T |
15021000 |
aaatcgtaaaagatagaagttcccctaaaacgacaatgcgtggagaacaaaagg |
15020947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 161 - 337
Target Start/End: Complemental strand, 15025990 - 15025815
Alignment:
| Q |
161 |
taaagcaaaggaaattagtgaaaatgctatggcaagctaaaggatacgcgatcccttgttgataaactagattcttgttcaccaactctgttcccatgat |
260 |
Q |
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| T |
15025990 |
taaagcgaaggaaattagtgaaaatgatatggcaagctagaggaaacgtgatccgttgttgataaa-tatattgttgttcatcaaccctgttcccatgat |
15025892 |
T |
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| Q |
261 |
cccccttcatcatattgttagttttgttttttacatgaaaaatgaggtgcaacattgctctataaatttctgcatgt |
337 |
Q |
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| T |
15025891 |
cccccttcatcattttgttggttttgttttttacatgtcaaatgaggcgcaacattggtctttacgtttctgcatgt |
15025815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 161 - 348
Target Start/End: Complemental strand, 15015439 - 15015252
Alignment:
| Q |
161 |
taaagcaaaggaaattagtgaaaatgctatggcaagctaaaggatacgcgatcccttgttgataaactagattcttgttcaccaactctgttcccatgat |
260 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| || ||| | ||||| |||| |||||| |||||| |
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| T |
15015439 |
taaagcgaaggaaattagtgaaaatgctatggcaagctaaaggaaacgtgatccattgttgataaaatatattgtagttcatcaaccctgttctcatgat |
15015340 |
T |
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| Q |
261 |
cccccttcatcatattgttagttttgttttttacatgaaaaatgaggtgcaacattgctctataaatttctgcatgtgtcgctgcacc |
348 |
Q |
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| T |
15015339 |
cctccttcatcgtattgttggttttgttttttagatgtctaatgaggcgcaacattggtctgtaagtttctgcatgtattgctgcacc |
15015252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 58 - 150
Target Start/End: Complemental strand, 15015634 - 15015542
Alignment:
| Q |
58 |
agaaggagaatttgacagagggaaaatgtgacttaattcttgcccgcctttttcattcaatcaaagttgactaaatagccttcaatcaattac |
150 |
Q |
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| T |
15015634 |
agaaagagaatttgacagagggaaaatgtgacttaattcttgcttgcctttttcgttcaatcaaagttagctaaatagtcttcaatcaattac |
15015542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 45 - 133
Target Start/End: Complemental strand, 15026203 - 15026115
Alignment:
| Q |
45 |
cagaactcaagaaagaaggagaatttgacagagggaaaatgtgacttaattcttgcccgcctttttcattcaatcaaagttgactaaat |
133 |
Q |
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|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
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| T |
15026203 |
cagaactccagacagaaagagaatttgacagagggaaaatgtgacttaattcttgcttgcctttttcgttcaatcaaagttggctaaat |
15026115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 587 - 654
Target Start/End: Original strand, 15002928 - 15002995
Alignment:
| Q |
587 |
atagtacctcccttaaatcgtaaaagataggagttcccctaaaacgacaatacgtagagaacaaaagg |
654 |
Q |
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| T |
15002928 |
atagtaactcccttaaatcttaaaagataaaaggtccccaaaaatgacaataagtagagaacaaaagg |
15002995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 301 - 355
Target Start/End: Original strand, 15002601 - 15002655
Alignment:
| Q |
301 |
aatgaggtgcaacattgctctataaatttctgcatgtgtcgctgcaccgttgctt |
355 |
Q |
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||||||| ||||||||||||| ||| ||||||||||||| |||||||| |||||| |
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| T |
15002601 |
aatgaggcgcaacattgctctgtaagtttctgcatgtgttgctgcacccttgctt |
15002655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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