View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16098_low_2 (Length: 382)
Name: NF16098_low_2
Description: NF16098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16098_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 29090200 - 29090551
Alignment:
| Q |
13 |
agaaagagaggaagtatacgaagatcaatgttaataggatactcattcataatcatatggttattgttgattgatttcataatgagcttgttgcattctt |
112 |
Q |
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| T |
29090200 |
agaaagagaggaagtatatgaagatcaatggtaataggatactcattcat------atggttattgttgatggatttcataatgagcttgttgcattctt |
29090293 |
T |
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| Q |
113 |
cctccatggacgctgacatagttcttgtcgatagattccacaacaagtttattgcactcttctccatggcacaattgacatccttggaggaagaaaacag |
212 |
Q |
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| T |
29090294 |
cctccatggacgctgacatagttcttgtcgatagataccacaacaagtttattgcactcttctccatggcacaattgacatccttggaggaagaaaacag |
29090393 |
T |
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| Q |
213 |
ccatggaagatgagtgcaatatactcatcatggaatctttatcccatcatatatactgtattattttaaaatttctccgcaaaatcatgataataacaaa |
312 |
Q |
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| T |
29090394 |
ccatggaagatgagtgcaatatactcatcatggaatctttatcccatcatatatactgtattattttaaaatttctccgcaaaatcatgataataacgaa |
29090493 |
T |
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| Q |
313 |
agatgagctagctcaaatgcacactatttatcttcaagaagtttccccaaagtttggt |
370 |
Q |
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| T |
29090494 |
agatgagctagctcaaatgcacactatttatcttcaagaagtttccccaaaatttggt |
29090551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 370
Target Start/End: Original strand, 14019950 - 14020043
Alignment:
| Q |
276 |
ttttaaaatttctccgcaaaatcatgataataacaaaagatgagctagctcaaatgcacactatttatcttcaagaagtttccccaaagtttggt |
370 |
Q |
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| T |
14019950 |
ttttaaaatttctccgcaaaatcatgattacaacaaaagctgagctagctcaaatgcacacta-ttatcttcatgaagtttccccaaaatttggt |
14020043 |
T |
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