View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16099_high_3 (Length: 348)
Name: NF16099_high_3
Description: NF16099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16099_high_3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Original strand, 48070106 - 48070443
Alignment:
| Q |
11 |
cagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtcagcaataataaggcattgaagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48070106 |
cagagacctatatatagaagcagaacaatgccatattcaggaccattagatggaagaatgcatgagcagaaaatggtgagcaataataaggcattgaagt |
48070205 |
T |
|
| Q |
111 |
tatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48070206 |
tatcaggaccaattgatggaagattgatgaatgagagaatgatgatttatactaatagaagtccattaagaagtagggctattgatggaagattcaccaa |
48070305 |
T |
|
| Q |
211 |
gagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48070306 |
gagtccaatatctggacctttggatgcaaaaatcatgtttgagaatagaagtccaactattacaagggcttctgttgaaactgatagcccaatgggttat |
48070405 |
T |
|
| Q |
311 |
agtagtccttataataaacccaaaggtgattttgattt |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48070406 |
agtagtccttataataaacccaaaggtgattttgattt |
48070443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University