View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16099_high_4 (Length: 330)

Name: NF16099_high_4
Description: NF16099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16099_high_4
NF16099_high_4
[»] chr8 (5 HSPs)
chr8 (1-323)||(24788360-24788682)
chr8 (4-260)||(38245904-38246160)
chr8 (60-103)||(38921194-38921237)
chr8 (197-265)||(34180960-34181028)
chr8 (167-223)||(36481465-36481521)
[»] chr2 (6 HSPs)
chr2 (15-240)||(38624051-38624274)
chr2 (52-252)||(5539796-5539996)
chr2 (60-229)||(36400387-36400556)
chr2 (180-265)||(40368314-40368399)
chr2 (60-214)||(15916391-15916544)
chr2 (141-242)||(7447088-7447189)
[»] chr6 (10 HSPs)
chr6 (18-260)||(29071256-29071498)
chr6 (18-260)||(29103829-29104071)
chr6 (96-260)||(19229348-19229514)
chr6 (4-249)||(18780623-18780868)
chr6 (34-101)||(19230121-19230188)
chr6 (60-229)||(3296884-3297053)
chr6 (60-101)||(24395702-24395743)
chr6 (60-101)||(18970902-18970943)
chr6 (51-91)||(9856416-9856456)
chr6 (60-100)||(21605321-21605361)
[»] chr5 (2 HSPs)
chr5 (51-265)||(25352450-25352664)
chr5 (54-212)||(16160223-16160381)
[»] chr1 (13 HSPs)
chr1 (17-250)||(14207232-14207465)
chr1 (120-248)||(41159443-41159571)
chr1 (50-115)||(33568653-33568718)
chr1 (51-151)||(31403955-31404055)
chr1 (167-223)||(38158249-38158305)
chr1 (48-115)||(46269208-46269275)
chr1 (186-271)||(23756778-23756863)
chr1 (180-265)||(47671316-47671401)
chr1 (48-103)||(48242237-48242292)
chr1 (60-106)||(22157822-22157868)
chr1 (186-235)||(6043684-6043733)
chr1 (141-253)||(81533-81645)
chr1 (167-223)||(45813902-45813958)
[»] chr7 (11 HSPs)
chr7 (51-251)||(13807878-13808078)
chr7 (15-194)||(13760835-13761013)
chr7 (48-115)||(43883964-43884031)
chr7 (168-252)||(19480659-19480743)
chr7 (51-115)||(1718297-1718361)
chr7 (45-265)||(6802788-6803008)
chr7 (137-265)||(29802594-29802722)
chr7 (51-91)||(49146368-49146408)
chr7 (60-105)||(9598592-9598637)
chr7 (60-105)||(9826163-9826208)
chr7 (140-225)||(26159689-26159774)
[»] chr3 (9 HSPs)
chr3 (45-225)||(3159566-3159746)
chr3 (45-265)||(38394746-38394966)
chr3 (48-115)||(43858280-43858347)
chr3 (9-103)||(47746376-47746470)
chr3 (60-103)||(10927136-10927179)
chr3 (60-105)||(53505588-53505633)
chr3 (171-223)||(41226543-41226595)
chr3 (73-115)||(11874398-11874440)
chr3 (60-106)||(15206043-15206089)
[»] chr4 (8 HSPs)
chr4 (140-225)||(18992050-18992132)
chr4 (76-265)||(48489116-48489305)
chr4 (45-265)||(12376823-12377043)
chr4 (48-103)||(53480776-53480831)
chr4 (139-225)||(41147925-41148011)
chr4 (58-196)||(3693116-3693251)
chr4 (76-250)||(11581185-11581359)
chr4 (167-223)||(2473527-2473583)
[»] scaffold0259 (1 HSPs)
scaffold0259 (60-212)||(4076-4228)
[»] scaffold0011 (1 HSPs)
scaffold0011 (45-124)||(218174-218253)
[»] scaffold0074 (1 HSPs)
scaffold0074 (60-101)||(25786-25827)


Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 24788682 - 24788360
Alignment:
Q  1 atcctcaattcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaa 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24788682 atcctcaattcaccaagatggcgggcatgccgttattttcacacttatttttcaggattatttggtttgcaactgtttgggtgatttggaaggagaggaa 24788583  T
Q  101 taaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggctttt 200  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||    
T  24788582 taactgaatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaattcattcttatggttgaaatcgaaacaggtaactttt 24788483  T
Q  201 gtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaattttattcttcagcctttggctagtgctttttgcagtac 300  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||  ||||||||||||||||||| || ||    
T  24788482 gtttatagttaccacgactggtggagacaacccattctttgtatggttgttcttatgtaatttttattcctcaatctttggctagtgctttttgtagcac 24788383  T
Q  301 cttgactgtgtaaatattcttcg 323  Q
    ||| |||||||||||||| ||||    
T  24788382 cttaactgtgtaaatatttttcg 24788360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 4 - 260
Target Start/End: Complemental strand, 38246160 - 38245904
Alignment:
Q  4 ctcaattcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    |||| ||||| |||||||  ||||||||| ||||| |||| ||||| |||| |||||||||||||||||||  |||||||||||||||||||| ||| ||    
T  38246160 ctcagttcactaagatggttggcatgccgatattttcacatttattcttcaagattatttggtttgcaattaattgggtgatttggaaggagaagaacaa 38246061  T
Q  104 ccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtt 203  Q
    |  ||| ||||| ||||||||  | ||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||  |||||||||| |    
T  38246060 ctagatatttcaaaacacggtacccactccttttactctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactagtggcttttgct 38245961  T
Q  204 tatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaa 260  Q
    |||||||| || ||| |||||| ||| | |||||||||  ||||||||||| |||||    
T  38245960 tatagttatcatgaccggtggaaacaccacattctttgcatgggtgttcttctgtaa 38245904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Complemental strand, 38921237 - 38921194
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  38921237 atttggtttgcaactgtttgggtcatttggaaggagaggaataa 38921194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 34181028 - 34180960
Alignment:
Q  197 ttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 265  Q
    ||||||||||  ||| ||||| ||||||| ||| ||  |||||||| ||||||||||||||||| ||||    
T  34181028 ttttgtttattcttatcacgattggtggaaacaccctgttctttgtatgggtgttcttatgtaattttt 34180960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 36481465 - 36481521
Alignment:
Q  167 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 223  Q
    |||||||||||| ||| | ||||||||   ||||| |||||||||||||||||||||    
T  36481465 attcttatggttaaaaactaaacaggttaattttgcttatagttaccacgactggtg 36481521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 15 - 240
Target Start/End: Original strand, 38624051 - 38624274
Alignment:
Q  15 aagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttc 114  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||| | ||||| ||||||||||||||| |||  ||| ||| ||||    
T  38624051 aagatggcgggcatgccattattttcacatttatttttcaggattatttgctttgcaactatttggatgatttggaaggagatgaa--accagatatttc 38624148  T
Q  115 ataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttacca 214  Q
    | || ||| | || ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||| |||||||||||     
T  38624149 aaaatacgatatccacttcctttactctcattgaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggctcttgcttatagttaccg 38624248  T
Q  215 cgactggtggagacaacccattcttt 240  Q
     ||||||||  |||| ||||||||||    
T  38624249 ggactggtgacgacaccccattcttt 38624274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 252
Target Start/End: Original strand, 5539796 - 5539996
Alignment:
Q  52 tcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaa 151  Q
    ||||||| |||||||||||    ||||||||||| ||||| || | ||||||| |  | ||||| || |||||||||| ||| | || ||||||||||||    
T  5539796 tcaggataatttggtttgcttccgtttgggtgatatggaaagaaaagaataactgtgtctttcaaaatacggtttctaatccttctattctcattgaaaa 5539895  T
Q  152 agtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgtt 251  Q
    ||| |||   ||||||||||| ||||||||||| ||||||||| | |||   |||| ||| || |||||||||| ||| ||  |||||||| ||| ||||    
T  5539896 agttaagccaaatttattcttgtggttgaaatcaaaacaggtgtcctttagctataattatcatgactggtggaaacatccgcttctttgtatggatgtt 5539995  T
Q  252 c 252  Q
    |    
T  5539996 c 5539996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 36400556 - 36400387
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 159  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| ||  | || || || ||| | || | ||| |  |  |||| ||| ||||| |||     
T  36400556 atttggtttgcaactgtttgggtgatatggaaggagaggaataatcgtgtattccaaaatacgatatccaatccttcaatactcactgagaaagtcaagc 36400457  T
Q  160 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagaca 229  Q
    | ||||  ||||||||| ||||||| ||||||||||| || | ||||| |||||||||||| ||||||||    
T  36400456 taaattccttcttatggctgaaatctaaacaggtggccttagcttatacttaccacgactgatggagaca 36400387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 265
Target Start/End: Complemental strand, 40368399 - 40368314
Alignment:
Q  180 aaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 265  Q
    ||||| |||||||||| ||||||||||  ||||||||| ||||||| ||| ||  || ||||| ||||||||||||||||| ||||    
T  40368399 aaatctaaacaggtggattttgtttattcttaccacgattggtggaaacaccctgttttttgtatgggtgttcttatgtaattttt 40368314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 214
Target Start/End: Original strand, 15916391 - 15916544
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 159  Q
    ||||| ||||||| | |||||||||||| |||||| | ||| || ||  | ||||| ||  |||| || ||||| |||| ||||||| ||||||| ||||    
T  15916391 atttgatttgcaactctttgggtgatttagaaggaaatgaacaatcgtgtatttcaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 15916490  T
Q  160 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttacca 214  Q
    | ||| | ||||||||||||||||| ||||||  ||| |||| ||||| ||||||    
T  15916491 ttaatct-ttcttatggttgaaatctaaacagacggcctttggttataattacca 15916544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 7447189 - 7447088
Alignment:
Q  141 ctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattcttt 240  Q
    |||||||||||||| ||| || |||  ||| | ||||||||||| ||| || ||||||||| ||||  ||||||||| ||||||| ||| || |||||||    
T  7447189 ctcattgaaaaagtgaagctgcattccttcctttggttgaaatctaaatagatggcttttgcttattcttaccacgaatggtggaaacacccaattcttt 7447090  T
Q  241 gt 242  Q
    ||    
T  7447089 gt 7447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 29071498 - 29071256
Alignment:
Q  18 atggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcata 117  Q
    |||||||| |||||||| | | | || | ||| |||||||||||||| ||||| | | |||||||| |||||||||| |||||||||| | |||| || |    
T  29071498 atggcgggtatgccgttctctactcaatcattcttcaggattatttgatttgccactatttgggtgctttggaaggaaaggaataaccaggttttccaaa 29071399  T
Q  118 acacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacga 217  Q
    | ||| ||||  |||| |||||||||||||||||||| ||  |  |||||||| | |||||||||||||||||||||||||||||||||| ||| |||||    
T  29071398 atacgatttcatctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacga 29071299  T
Q  218 ctggtggagacaacccattctttgtttgggtgttcttatgtaa 260  Q
     ||||||| ||| ||||||| |||| ||| |||| | ||||||    
T  29071298 ttggtggaaacaccccattcattgtatggatgttatcatgtaa 29071256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 29104071 - 29103829
Alignment:
Q  18 atggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcata 117  Q
    |||||||| |||||||| | | | || | ||| |||||||||||||| ||||| | | |||||||| |||||||||| |||||||||| | |||| || |    
T  29104071 atggcgggtatgccgttctctactcaatcattcttcaggattatttgatttgccactatttgggtgctttggaaggaaaggaataaccaggttttccaaa 29103972  T
Q  118 acacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacga 217  Q
    | ||| ||||  |||| |||||||||||||||||||| ||  |  |||||||| | |||||||||||||||||||||||||||||||||| ||| |||||    
T  29103971 atacgatttcatctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacga 29103872  T
Q  218 ctggtggagacaacccattctttgtttgggtgttcttatgtaa 260  Q
     ||||||| ||| ||||||| |||| ||| |||| | ||||||    
T  29103871 ttggtggaaacaccccattcattgtatggatgttatcatgtaa 29103829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 260
Target Start/End: Complemental strand, 19229514 - 19229348
Alignment:
Q  96 aggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtgg 195  Q
    ||||| |||||||| ||||| || ||||| || ||||| || |||||| || ||||||||||||| |||| |||||||||||||||||| ||||| ||||    
T  19229514 aggaacaaccggatatttcaaaatacggtatccactcctttcactctcgttaaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtgg 19229415  T
Q  196 cttttgtttatagttaccacgactggtggagacaacccattctttgtttgg--gtgttcttatgtaa 260  Q
    |||||| |||||||||||||||| |||| | ||| |||||| ||| | |||  ||||||||||||||    
T  19229414 cttttgcttatagttaccacgaccggtgaaaacaccccattttttatatgggtgtgttcttatgtaa 19229348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 249
Target Start/End: Complemental strand, 18780868 - 18780623
Alignment:
Q  4 ctcaattcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    |||| ||||| |||||||||||||||||    | | | || |||||||||| |||||||||||||| || | |||||||| |||||||||| |||| |||    
T  18780868 ctcagttcactaagatggcgggcatgccaacctattctcatttatttttcaagattatttggtttgtaaatatttgggtgctttggaaggataggattaa 18780769  T
Q  104 ccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtt 203  Q
     ||| | ||||| || | || |||| | | |||| |||||||||||||||| ||| |  |||  ||| | ||| ||||||| |||||| |||||||||      
T  18780768 tcgggtatttcaaaatatggcttcttcacacttttctctcattgaaaaagtgaagctccattccttcctttggctgaaatctaaacagatggcttttgcc 18780669  T
Q  204 tatagttaccacgactggtggagacaacccattctttgtttgggtg 249  Q
    |||| ||||||||| ||||||| ||| || ||||||||| ||||||    
T  18780668 tatacttaccacgattggtggaaacacccaattctttgtatgggtg 18780623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 19230188 - 19230121
Alignment:
Q  34 tatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaat 101  Q
    ||||| |||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||    
T  19230188 tattttcacatttattcttcagaattatttggtttgcaagtgtttgggtgatttggaaggagatgaat 19230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 229
Target Start/End: Complemental strand, 3297053 - 3296884
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 159  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||| ||  | || || || ||| | || | ||| |  |  |||||||| ||||| |||     
T  3297053 atttggtttgcaactgtttgggtgatatggaaggagcggaataatcgtgtcttccaaaatacgatatccaatccttcaatactcattgagaaagtcaagc 3296954  T
Q  160 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagaca 229  Q
    | |||| |||||||||| ||||||| ||||| ||||| || | ||||| |||||| || |||||||||||    
T  3296953 taaattcattcttatggctgaaatctaaacatgtggccttagcttatacttaccatgattggtggagaca 3296884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 24395702 - 24395743
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaat 101  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  24395702 atttggtttgcaactgtttgggtgatttggaaggaaaggaat 24395743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Complemental strand, 18970943 - 18970902
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaat 101  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||    
T  18970943 atttggtttgcaactgtttaggtgatttggaaggaaaggaat 18970902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 9856456 - 9856416
Alignment:
Q  51 ttcaggattatttggtttgcaattgtttgggtgatttggaa 91  Q
    |||||||||||||||||||||  ||| ||||||||||||||    
T  9856456 ttcaggattatttggtttgcagctgtctgggtgatttggaa 9856416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 100
Target Start/End: Complemental strand, 21605361 - 21605321
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaa 100  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  21605361 atttggtttgcatctgtttgggtgatttggaaggaaaggaa 21605321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 51 - 265
Target Start/End: Complemental strand, 25352664 - 25352450
Alignment:
Q  51 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaa 150  Q
    |||||||| ||||||||||||||| |||||||| |||||||||  |||||| | ||||||||||| || | | ||||  |||| ||||||||||||||||    
T  25352664 ttcaggataatttggtttgcaattatttgggtgctttggaagggaaggaatgatcggatttttcaaaatatgatttcatctccttttactctcattgaaa 25352565  T
Q  151 aagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgt 250  Q
    |||| |  ||  ||| |||| | ||||||||||||||| ||||||||||| |||||| | || || |  |||||| ||| ||||||  |||| |||||||    
T  25352564 aagttagatttcattcattcctttggttgaaatcgaaataggtggcttttatttatactcacaacaagaggtggaaacaccccatttattgtatgggtgt 25352465  T
Q  251 tcttatgtaaatttt 265  Q
      |||||||| ||||    
T  25352464 gattatgtaattttt 25352450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 212
Target Start/End: Original strand, 16160223 - 16160381
Alignment:
Q  54 aggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaag 153  Q
    ||||| ||||||||||||| |||||||||||||||||| || | ||| |||||  | ||||| || || || || ||||| |||| ||||||||| |||     
T  16160223 aggataatttggtttgcaactgtttgggtgatttggaaagaaatgaacaaccgtgtatttcaaaatacagtgtccactccttttattctcattgataaaa 16160322  T
Q  154 taaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttac 212  Q
    | ||| |  ||  |||||||||| ||||||| ||||||||||| ||||  |||||||||    
T  16160323 ttaagcttcatccattcttatggctgaaatccaaacaggtggcctttgcctatagttac 16160381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 14207232 - 14207465
Alignment:
Q  17 gatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcat 116  Q
    ||||||||| |||||  ||| | |||| ||||| |||||||||||||||||||  | | ||||||||  || |||||| ||||| |||| | |||||||     
T  14207232 gatggcgggaatgccaatatcttcacatttattcttcaggattatttggtttgttaatatttgggtgccttagaaggaaaggaacaaccaggtttttcaa 14207331  T
Q  117 aacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacg 216  Q
    || |||| ||||||| | |||  |||||||||||||||||||||  |||  ||||| ||||||||||| ||||||| |||||||| ||| | ||| ||||    
T  14207332 aatacgggttctacttcttttgttctcattgaaaaagtaaagtttcattccttcttttggttgaaatctaaacaggcggcttttgcttacacttatcacg 14207431  T
Q  217 actggtggagacaacccattctttgtttgggtgt 250  Q
    || |||||| |||  |||| | |||| |||||||    
T  14207432 accggtggaaacactccatcccttgtatgggtgt 14207465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 248
Target Start/End: Original strand, 41159443 - 41159571
Alignment:
Q  120 acggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgact 219  Q
    ||||||||||||| ||| | |||| |||||||||| ||| |  |||  ||| | ||| ||||||| ||||| ||| |||||| ||||| ||||||||| |    
T  41159443 acggtttctactcacttcattctctttgaaaaagtgaagcttcattctttcctttggctgaaatctaaacatgtgacttttgcttataattaccacgatt 41159542  T
Q  220 ggtggagacaacccattctttgtttgggt 248  Q
    |||||| ||| |||||||||||| |||||    
T  41159543 ggtggaaacaccccattctttgtatgggt 41159571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 33568718 - 33568653
Alignment:
Q  50 tttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 115  Q
    ||||||||||||||||||||| |  |||||||| ||||||||||| ||||||||||| || |||||    
T  33568718 tttcaggattatttggtttgccacagtttgggtcatttggaaggataggaataaccgaatatttca 33568653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 151
Target Start/End: Original strand, 31403955 - 31404055
Alignment:
Q  51 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaa 150  Q
    |||||||| |||||||||||||  |||||| ||||||||||||| |||||||||||  | || || |  ||||| |||| ||| |||||||| |||||||    
T  31403955 ttcaggataatttggtttgcaaccgtttggatgatttggaaggataggaataaccgcgtattccaaactacggtatctaatccttttactctaattgaaa 31404054  T
Q  151 a 151  Q
    |    
T  31404055 a 31404055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 38158249 - 38158305
Alignment:
Q  167 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 223  Q
    |||||||||||||||| | ||||||||   |||||||||||||||||||||||||||    
T  38158249 attcttatggttgaaaactaaacaggttaattttgtttatagttaccacgactggtg 38158305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 46269275 - 46269208
Alignment:
Q  48 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 115  Q
    ||||||||| ||||||||||| | | | ||||||||||||||||||| |||||||| ||| |||||||    
T  46269275 tttttcagggttatttggtttaccactatttgggtgatttggaaggaaaggaataatcgggtttttca 46269208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 271
Target Start/End: Complemental strand, 23756863 - 23756778
Alignment:
Q  186 aaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaattttattctt 271  Q
    |||||||||||||||||||||| ||  ||||| ||||||||||| | || ||||||  |||||| |||| ||||| |||| |||||    
T  23756863 aaacaggtggcttttgtttatacttttcacgattggtggagacatctcactctttgcatgggtgctcttttgtaatttttgttctt 23756778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 265
Target Start/End: Original strand, 47671316 - 47671401
Alignment:
Q  180 aaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 265  Q
    ||||| ||||||| |  ||||||||||  ||||||||| ||||||| ||| ||  |||||||| ||||||||||||||||| ||||    
T  47671316 aaatctaaacaggcgaattttgtttattcttaccacgattggtggaaacaccctgttctttgtatgggtgttcttatgtaattttt 47671401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 103
Target Start/End: Original strand, 48242237 - 48242292
Alignment:
Q  48 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||| | ||||||    
T  48242237 tttttcagggttatttggtttgccactatttgggtgatttggaaggaaaagaataa 48242292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 22157868 - 22157822
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccg 106  Q
    ||||||||||||  ||||||||||||||||||||| ||||| |||||    
T  22157868 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccg 22157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 6043733 - 6043684
Alignment:
Q  186 aaacaggtggcttttgtttatagttaccacgactggtggagacaacccat 235  Q
    |||||||||| ||||||||||  ||||||||||||||||| ||| |||||    
T  6043733 aaacaggtggattttgtttattcttaccacgactggtggaaacaccccat 6043684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 253
Target Start/End: Complemental strand, 81645 - 81533
Alignment:
Q  141 ctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattcttt 240  Q
    ||||| |||| ||||||||  ||||  | |||||||||||  || ||||||||||||| || |||||  || ||||||||||||| ||| | ||||  ||    
T  81645 ctcatcgaaatagtaaagtataattcttacttatggttgaggtctaaacaggtggcttctgcttatacatagcacgactggtggaaacacctcatttctt 81546  T
Q  241 gtttgggtgttct 253  Q
    || ||||||||||    
T  81545 gtatgggtgttct 81533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 45813958 - 45813902
Alignment:
Q  167 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 223  Q
    |||||||||||||||| | ||||| ||   ||||| |||||||||||||||||||||    
T  45813958 attcttatggttgaaaactaaacaagttaattttgcttatagttaccacgactggtg 45813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 51 - 251
Target Start/End: Complemental strand, 13808078 - 13807878
Alignment:
Q  51 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaa 150  Q
    |||||||||||||||||||||| ||||||| |||||||||||||   ||| ||| || | || || || ||  ||||  |||| | | |||||||||||     
T  13808078 ttcaggattatttggtttgcaactgtttggatgatttggaaggaattgaacaactgggtattccaaaatacactttccgctccttcttctctcattgaac 13807979  T
Q  151 aagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgt 250  Q
    |||||||||| ||||  || |||||||||||||| ||||| ||||| || | ||||||||| || || ||||||| ||| | |||||||||| |||||||    
T  13807978 aagtaaagttaaattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaacacctcattctttgtatgggtgt 13807879  T
Q  251 t 251  Q
    |    
T  13807878 t 13807878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 13760835 - 13761013
Alignment:
Q  15 aagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttc 114  Q
    |||||||||||||||||   |||| | || |||||  | ||||| ||||||||||| | |||||||||||| || ||||| |||||||||||  | ||||    
T  13760835 aagatggcgggcatgccaagattttctcatttattcctaaggataatttggtttgctactgtttgggtgatatgaaaggaaaggaataaccgtgtctttc 13760934  T
Q  115 ataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtg 194  Q
    | || || ||||||| ||  |||| ||||||||||||||| ||| | |||| |||||||||||||||||| |||||||||    
T  13760935 aaaatacagtttcta-tctttttattctcattgaaaaagttaagctaaattcattcttatggttgaaatcaaaacaggtg 13761013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 43884031 - 43883964
Alignment:
Q  48 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 115  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||| |||||||| ||| |||||||    
T  43884031 ttttttagggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcgggtttttca 43883964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 19480743 - 19480659
Alignment:
Q  168 ttcttatggttgaaatcgaaacaggtggct-tttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttc 252  Q
    ||||||||||||||||| ||||||| |||| |||  ||| |||||||| |||||||||| ||| ||| |||||||| |||||||||    
T  19480743 ttcttatggttgaaatcaaaacagg-ggctatttagttacagttaccatgactggtggaaacatccccttctttgtatgggtgttc 19480659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 1718297 - 1718361
Alignment:
Q  51 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 115  Q
    |||||| ||||||||||||| | | ||| ||||||||||||||| |||||||| ||| |||||||    
T  1718297 ttcagggttatttggtttgccactatttaggtgatttggaaggaaaggaataatcgggtttttca 1718361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 6802788 - 6803008
Alignment:
Q  45 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 144  Q
    ||||| |||| ||||||||||||||  | | ||||||||||||||||||| ||||| || | ||| ||| |||  |||||||| | |   || ||||| |    
T  6802788 ttattcttcacgattatttggtttgtcactatttgggtgatttggaaggaaaggaacaatcagatatttaatagtacggtttccaataatttgactctta 6802887  T
Q  145 ttgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgttt 244  Q
    | || || || |||||| |||  ||| | ||| | ||||| |||  ||||  ||||| ||||  ||||||||| ||||||| ||| ||  |||||||| |    
T  6802888 tagagaaggtgaagttgcattccttcctttggcttaaatctaaattggtgaattttgcttattcttaccacgattggtggaaacaccctgttctttgtat 6802987  T
Q  245 gggtgttcttatgtaaatttt 265  Q
    |||||||||||||||| ||||    
T  6802988 gggtgttcttatgtaattttt 6803008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 265
Target Start/End: Original strand, 29802594 - 29802722
Alignment:
Q  137 tactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccatt 236  Q
    |||||||||||| ||||| ||||||||||  || ||||||||||||||||| || ||  |  ||| || | |||| || |||| |||| |||| ||  ||    
T  29802594 tactctcattgataaagttaagttgaattcctttttatggttgaaatcgaatcaagttccgattgctttttgttatcatgactagtggtgacacccgctt 29802693  T
Q  237 ctttgtttgggtgttcttatgtaaatttt 265  Q
    |||| | ||||||||||||||||| ||||    
T  29802694 ctttatatgggtgttcttatgtaattttt 29802722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Original strand, 49146368 - 49146408
Alignment:
Q  51 ttcaggattatttggtttgcaattgtttgggtgatttggaa 91  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  49146368 ttcaggattattttgtttgcaactgtttgggtgatttggaa 49146408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 9598592 - 9598637
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataacc 105  Q
    ||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  9598592 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9598637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 9826163 - 9826208
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataacc 105  Q
    ||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  9826163 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9826208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 26159689 - 26159774
Alignment:
Q  140 tctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 225  Q
    ||||||||||||||| ||| | |||| |||||| |||||||||||  |||| ||| | |||  ||||||||| || ||||||||||    
T  26159689 tctcattgaaaaagttaagctaaattcattcttgtggttgaaatcataacatgtgtcatttagttatagttatcatgactggtgga 26159774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 3159746 - 3159566
Alignment:
Q  45 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 144  Q
    ||||| |||||||||||||||||||| | | |||||||| |||||||||| |||||||||||| | ||||| || || | ||| ||| | |||  |||||    
T  3159746 ttattcttcaggattatttggtttgccactatttgggtgctttggaaggaaaggaataaccgggtatttcaaaatactggttccacttcttttgttctca 3159647  T
Q  145 ttgaaaaagtaaag-ttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 225  Q
    |||||||||||||| || ||| | ||||| ||| ||||||| |||||||  ||||||| |||   |||||||||||||||||    
T  3159646 ttgaaaaagtaaagcttcaatct-ttcttttggctgaaatctaaacaggctgcttttgattacgcttaccacgactggtgga 3159566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 265
Target Start/End: Original strand, 38394746 - 38394966
Alignment:
Q  45 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 144  Q
    |||||||||| ||||||||||||||  | | ||||| |  |||||||||| ||||| |  ||| | ||||| ||   || |||||| |  ||||||||||    
T  38394746 ttatttttcaagattatttggtttgttactatttggatcctttggaaggaaaggaacagtcgggtatttcaaaatttggcttctacacaatttactctca 38394845  T
Q  145 ttgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgttt 244  Q
    |||||||||| ||| |  |||  ||| | ||| ||||||| ||||||||||||||||  |||| ||||||||| ||||||| |||  | |||||||||      
T  38394846 ttgaaaaagtgaagcttcattccttcctttggatgaaatctaaacaggtggcttttgcctatacttaccacgattggtggaaacactcaattctttgtac 38394945  T
Q  245 gggtgttcttatgtaaatttt 265  Q
    |||||||| | ||||| ||||    
T  38394946 gggtgttcgtttgtaattttt 38394966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 43858347 - 43858280
Alignment:
Q  48 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 115  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||| |||||||| ||| |||||||    
T  43858347 tttttcagggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcgggtttttca 43858280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 47746470 - 47746376
Alignment:
Q  9 ttcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    ||||| ||||||||||| |||||  | ||| | || |||| ||||||||||||||||||||| | ||||| ||||||||||||||| | ||||||    
T  47746470 ttcactaagatggcgggaatgcctctttttactcagttatatttcaggattatttggtttgccactgtttaggtgatttggaaggaaatgaataa 47746376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 103
Target Start/End: Original strand, 10927136 - 10927179
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  10927136 atttgatttgcaactgtttgggtgatttggaaggagaggaataa 10927179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 53505588 - 53505633
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataacc 105  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||    
T  53505588 atttggtttgctgttgtttgggttatttggaaggagaggaataacc 53505633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 41226543 - 41226595
Alignment:
Q  171 ttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 223  Q
    |||||||||||| | ||||||||   |||||||||||||||||||||||||||    
T  41226543 ttatggttgaaaactaaacaggttaattttgtttatagttaccacgactggtg 41226595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 11874440 - 11874398
Alignment:
Q  73 ttgtttgggtgatttggaaggagaggaataaccggatttttca 115  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||    
T  11874440 ttgtgtgggtgatttggaaggagaggaacaaccgaatttttca 11874398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 15206043 - 15206089
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccg 106  Q
    ||||||||||||  ||||||||||||||||||||| ||||| |||||    
T  15206043 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccg 15206089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 18992050 - 18992132
Alignment:
Q  140 tctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 225  Q
    |||||| |||||||||||||| |||| |||||||||||||||||| ||| ||||||| ||||   |||||||||||||||||||||    
T  18992050 tctcatcgaaaaagtaaagttaaattcattcttatggttgaaatctaaataggtggcctttg---atagttaccacgactggtgga 18992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 265
Target Start/End: Complemental strand, 48489305 - 48489116
Alignment:
Q  76 tttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatg 175  Q
    |||||||| |||||||||| || || |||||| | ||||| || |||| ||| ||| | |||  ||||||||||||||||||| | ||||  ||| | ||    
T  48489305 tttgggtgctttggaaggaaagaaacaaccgggtatttcaaaatacgggttccacttcttttgttctcattgaaaaagtaaagcttaattctttcctttg 48489206  T
Q  176 gttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 265  Q
    | ||||||| ||||||   ||||||| |||   ||||||||||||||||| ||| ||||| |  ||| |||||||| |||||||| ||||    
T  48489205 gctgaaatctaaacagactgcttttgattacgcttaccacgactggtggaaacaccccatcccgtgtatgggtgttattatgtaattttt 48489116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 265
Target Start/End: Complemental strand, 12377043 - 12376823
Alignment:
Q  45 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 144  Q
    ||||| |||| ||||||||||||||  | | ||||||||||||||||||| ||||| || ||||| ||| |||  |||||||||| |   |||||||  |    
T  12377043 ttattcttcacgattatttggtttgtcactatttgggtgatttggaaggaaaggaacaatcggatatttaatagtacggtttctaataattttactcata 12376944  T
Q  145 ttgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgttt 244  Q
    | || || || ||| || |||  ||| | ||| | ||||| ||||||| |  ||||| ||||  ||||||||| ||||||| ||| ||  |||||||| |    
T  12376943 tagagaaggtgaagctgcattccttcctttggcttaaatctaaacaggcgaattttgcttattcttaccacgattggtggaaacaccctgttctttgtat 12376844  T
Q  245 gggtgttcttatgtaaatttt 265  Q
    |||||||||||||||| ||||    
T  12376843 gggtgttcttatgtaattttt 12376823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 103
Target Start/End: Complemental strand, 53480831 - 53480776
Alignment:
Q  48 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 103  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||| ||||||||    
T  53480831 tttttcagggttatttggtttgccactatttgggtgatttggaaggaaaggaataa 53480776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 41147925 - 41148011
Alignment:
Q  139 ctctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 225  Q
    ||||||||||||| || || || |||| |||||||||||||||||| ||||||||  | |||| ||||| ||| ||||| |||||||    
T  41147925 ctctcattgaaaaggttaaattaaattcattcttatggttgaaatctaaacaggtcacatttgcttataattatcacgattggtgga 41148011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 196
Target Start/End: Complemental strand, 3693251 - 3693116
Alignment:
Q  58 ttatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaa 157  Q
    ||||||||||||||| | ||||||  ||||||||| |||| ||||| ||  | || || ||||||||||| |||||  ||| |||| ||||||| || ||    
T  3693251 ttatttggtttgcaactatttgggcaatttggaagaagagaaataatcgtgtattccaaaacacggtttccactcc--ttattctc-ttgaaaaggttaa 3693155  T
Q  158 gttgaatttattcttatggttgaaatcgaaacaggtggc 196  Q
    | | ||||  ||||||||||||||||| || ||||||||    
T  3693154 ggttaattctttcttatggttgaaatctaatcaggtggc 3693116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 250
Target Start/End: Complemental strand, 11581359 - 11581185
Alignment:
Q  76 tttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatg 175  Q
    ||||| ||||||||||||| ||||||||| |  | || || |||||  |||| ||||| | | ||||| |||||| ||| ||| | |||| ||| |||||    
T  11581359 tttggatgatttggaaggaaaggaataactgtgtattccaaaacacaatttccactccttattctctccttgaaagagttaaggtaaattcattgttatg 11581260  T
Q  176 gttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgt 250  Q
    ||||||||  ||||| || || ||   |||||| ||||| || ||||||| ||| | |||||||||| |||||||    
T  11581259 gttgaaatttaaacatgtagcgttcaattatagctaccatgattggtggaaacatctcattctttgtatgggtgt 11581185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 2473583 - 2473527
Alignment:
Q  167 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 223  Q
    |||||||||||||||||| |||||||  | ||||| ||||||||||  |||||||||    
T  2473583 attcttatggttgaaatctaaacaggctgattttgcttatagttactgcgactggtg 2473527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 60 - 212
Target Start/End: Original strand, 4076 - 4228
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 159  Q
    ||||||||||||| | |||| ||||||||||| || ||||| ||||    |||||| || ||||| ||  |||| |||  ||||||||| ||| | ||||    
T  4076 atttggtttgcaactatttgagtgatttggaaagaaaggaacaaccatccttttcaaaatacggtatccgctccttttgttctcattgataaaattaagt 4175  T
Q  160 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttac 212  Q
    |  ||| |||||||||||||||||| ||||| | |||||| || |||||||||    
T  4176 ttcattcattcttatggttgaaatctaaacaagcggctttcgtatatagttac 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 45 - 124
Target Start/End: Original strand, 218174 - 218253
Alignment:
Q  45 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggt 124  Q
    |||| ||| ||||||||||||||  | | | |||||| ||||||||||||||||||||||||  ||||||| || |||||    
T  218174 ttatattttaggattatttggttatctactatttgggagatttggaaggagaggaataaccgtgtttttcaaaatacggt 218253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 101
Target Start/End: Original strand, 25786 - 25827
Alignment:
Q  60 atttggtttgcaattgtttgggtgatttggaaggagaggaat 101  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||    
T  25786 atttggtttgcaactgtttggatgatttggaaggaaaggaat 25827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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