View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16099_high_5 (Length: 327)
Name: NF16099_high_5
Description: NF16099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16099_high_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 25 - 327
Target Start/End: Original strand, 25010967 - 25011269
Alignment:
| Q |
25 |
catcccataacgccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatatca |
124 |
Q |
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| T |
25010967 |
catcccataacaccagggggttttccctgctgatccgacaagcgccaatactcacatctttccaacgcctacaaaggagccaaattcaaatgaaatgtca |
25011066 |
T |
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| Q |
125 |
tctagtcagttgcagaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
224 |
Q |
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| T |
25011067 |
tctagtcagttgcaaaataaacagacttgtctagtaaaaagcaaaaatggtaacagcgtaaacttctgtctgctcatttttaagtatccttagagaggtg |
25011166 |
T |
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| Q |
225 |
cggtgagtttcagtttaaaaacaaatttgaaattattactattaataaaggttagcactaatgatcattttacaattgtcccatataggatttgaactca |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
25011167 |
cggtgagtttcagtttaaaaacaaatttgaaattattattattaataaaggttagcactaatgatcattttacaattgttccatataggatttgaactca |
25011266 |
T |
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| Q |
325 |
tga |
327 |
Q |
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||| |
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| T |
25011267 |
tga |
25011269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 4752802 - 4752841
Alignment:
| Q |
284 |
aatgatcattttacaattgtcccatataggatttgaactc |
323 |
Q |
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| T |
4752802 |
aatgatcattttacaactgttccatataggatttgaactc |
4752841 |
T |
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