View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1609_high_10 (Length: 236)

Name: NF1609_high_10
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1609_high_10
NF1609_high_10
[»] scaffold0103 (1 HSPs)
scaffold0103 (8-221)||(6101-6314)
[»] chr6 (3 HSPs)
chr6 (8-221)||(2633695-2633908)
chr6 (6-207)||(12082828-12083029)
chr6 (96-220)||(871795-871919)
[»] chr7 (3 HSPs)
chr7 (8-221)||(12808676-12808889)
chr7 (8-221)||(37433118-37433331)
chr7 (96-220)||(276290-276414)
[»] chr5 (2 HSPs)
chr5 (8-221)||(21838205-21838416)
chr5 (113-221)||(4806909-4807016)
[»] chr8 (3 HSPs)
chr8 (8-221)||(32447217-32447430)
chr8 (8-221)||(27261031-27261244)
chr8 (110-217)||(4637665-4637772)
[»] chr2 (1 HSPs)
chr2 (96-220)||(25127261-25127383)


Alignment Details
Target: scaffold0103 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 6314 - 6101
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6314 agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa 6215  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6214 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 6115  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  6114 aaatgatatccatg 6101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 2633695 - 2633908
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2633695 agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa 2633794  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2633795 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 2633894  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  2633895 aaatgatatccatg 2633908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 12082828 - 12083029
Alignment:
Q  6 ggagaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaa 105  Q
    |||||| ||||||| ||| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| |||||||||| |||||||||||||||||||||    
T  12082828 ggagaaccaaaggttattatcattcaaatttcacacgtagccatatttatgagtcctgcacctaatgaaatcagttcaatattccaaagaagttagcaaa 12082927  T
Q  106 aatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaa 205  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||  |||||||    
T  12082928 aatctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattcttaaaattacttaatgatcaa 12083027  T
Q  206 gc 207  Q
    ||    
T  12083028 gc 12083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 871919 - 871795
Alignment:
Q  96 agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact 195  Q
    |||||| || |||||||||||||||||||||||| |||||||||||| | ||||  |||| ||| |||||||||||||||||||   | |||||||||||    
T  871919 agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact 871820  T
Q  196 tggtgatcaagcaaatgatatccat 220  Q
    ||||| |||||||| || |||||||    
T  871819 tggtgttcaagcaactgctatccat 871795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 12808889 - 12808676
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808889 agaaccaaaggtcattgtcactcaaatttcgcacgcaaccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 12808790  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12808789 tctcactggtttaaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 12808690  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  12808689 aaatgatatccatg 12808676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 37433118 - 37433331
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| ||||||| ||||||| ||||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  37433118 agaaccaaaggttattgtcattcaaatttcacacgtagacatatttatgattcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa 37433217  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    ||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| ||||||  |||||||| || |||  |||||||||    
T  37433218 tctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacagacaacaaccaaattcttaaagttccttaatgatcaagc 37433317  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  37433318 aaatgatatccatg 37433331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 276290 - 276414
Alignment:
Q  96 agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact 195  Q
    |||||| || |||||||||||||||||||||||| |||||||||||| | ||||  |||| ||| |||||||||||||||||||   | |||||||||||    
T  276290 agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact 276389  T
Q  196 tggtgatcaagcaaatgatatccat 220  Q
    ||||| |||||||| || |||||||    
T  276390 tggtgttcaagcaactgctatccat 276414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 21838416 - 21838205
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| ||||||| ||||||| ||||||||  |||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||||    
T  21838416 agaaccaaaggttattgtcattcaaatttaacacgtagccatatttatgagtcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa 21838317  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    ||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||| |||||||||||  | |||||||    
T  21838316 tctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattc-taaaattactt-atcatcaagc 21838219  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  21838218 aaatgatatccatg 21838205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 4806909 - 4807016
Alignment:
Q  113 ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||  ||| |||||||||||  | ||||||||||||    
T  4806909 ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaacaaccaaattc-taaaattacttaatcatcaagcaaatg 4807007  T
Q  213 atatccatg 221  Q
    |||||||||    
T  4807008 atatccatg 4807016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 32447217 - 32447430
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| ||||||| ||||||| ||||||||  || | |||| ||| | ||||||||||| || ||| |||||||||| |||| ||||||||||||||||||    
T  32447217 agaaccaaaggttattgtcaatcaaatttaacatgtagccgtatctttgagtcctacaactaatgaaatcagttcaatatttcaaagaagttagcaaaaa 32447316  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    ||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||||||  |||||||||    
T  32447317 tctaactgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagc 32447416  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  32447417 aaatgatatccatg 32447430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 27261031 - 27261244
Alignment:
Q  8 agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa 107  Q
    |||| ||||||| ||||||| | ||||||  || | |||| ||| | ||||||||||| || ||| ||| |||||| ||||||||||||||| |||||||    
T  27261031 agaaccaaaggttattgtcattaaaatttaacatgtagccgtatctttgagtcctacaactaatgaaataagttcaatattccaaagaagttggcaaaaa 27261130  T
Q  108 tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc 207  Q
    ||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||  |||||||||||||||  |||||||||    
T  27261131 tctaactgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagc 27261230  T
Q  208 aaatgatatccatg 221  Q
    ||||||||||||||    
T  27261231 aaatgatatccatg 27261244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 4637665 - 4637772
Alignment:
Q  110 tcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaa 209  Q
    |||||||||| ||||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||||  || |||||||| ||| |||||||| |||    
T  4637665 tcactggtttaaaaaaaaaataccaaaatcatgattgaatagcaaacaaaaataacacaaacagcaaccaaatttttaaaatttcttagtgatcaaacaa 4637764  T
Q  210 atgatatc 217  Q
    ||||||||    
T  4637765 atgatatc 4637772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 25127261 - 25127383
Alignment:
Q  96 agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact 195  Q
    |||||| || |||||||||||||||||||||||| |||||||||||| | ||||   | | ||| |||||||||||||||||||   | |||||||||||    
T  25127261 agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaat--gacagaaaaataacacaaacagcaaccaaagttttaaaattact 25127358  T
Q  196 tggtgatcaagcaaatgatatccat 220  Q
    ||||| |||||||| || |||||||    
T  25127359 tggtgttcaagcaactgctatccat 25127383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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