View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609_high_6 (Length: 289)
Name: NF1609_high_6
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-150; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 4094340 - 4094611
Alignment:
| Q |
18 |
taaagaacctttcatactaaagctttcaagtgtaattaattacataaggctaattgtaccaaccaatttaattgtttgtttctcctagttacactaattc |
117 |
Q |
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| T |
4094340 |
taaagaacctttcatactaaagctttcaagtgtaattaattacataaggctaattgtaccaaccaatttaattgtttgtttctcctagttacactaattc |
4094439 |
T |
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| Q |
118 |
ttttaatcagcattatgcctaattgaggtttcttttccactatgaaatggtaaaagaaaaatattccaaaaccattaggtgaaacatcactgagagaaac |
217 |
Q |
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| T |
4094440 |
ttttaatcagcattatgcctaattgaggtttcttttccactatgaaatggtaaaagaaaaatattccaaaaccattaggtgaaacatcactgagagaaac |
4094539 |
T |
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| Q |
218 |
tgatggatgttaaatactcagcataataattagtgtttatgtttgaaaaatccaatcattcatctagatatt |
289 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4094540 |
tgatggatgttaaatactcagcataataattagtgtgtatgtttgaaaaatccaatcattcatctagatatt |
4094611 |
T |
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