View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609_low_1 (Length: 540)
Name: NF1609_low_1
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 164 - 526
Target Start/End: Complemental strand, 41659904 - 41659542
Alignment:
| Q |
164 |
attttcatgattatgtttctgtctcctttccttcctcatattctttcgtacccaccattttcatcaacacccaccaacttttcgtgaaacccattttctg |
263 |
Q |
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| T |
41659904 |
attttcatgattttgtttctgtctcctttccttcctcatattctttcatacccaccattttcatcaaaacccaccaacttttcgtgaaacccattttctg |
41659805 |
T |
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| Q |
264 |
ttaaaccccatttcccctaaagtttgcatctttaaggcttctcatggaacataaacccaaaatcgaacctgggatgtgttcgaatgaccatagaaacttg |
363 |
Q |
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| T |
41659804 |
ttaaaccccatttcccctaaagtttgcatctttaaggcttctcatgtaacataaacccaaaatcgaacctgggttgtgttcaaatgaccatagaaacttg |
41659705 |
T |
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| Q |
364 |
aaagacatgagcattcaggaacttgtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgaga |
463 |
Q |
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| T |
41659704 |
gaagacatgagcattcaggaacttgtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgaga |
41659605 |
T |
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| Q |
464 |
gactacagacagagattctgcattttcaagagaagtttgacttggagagactgatgaggtttc |
526 |
Q |
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| T |
41659604 |
gactacacacagagattctacattttcaagagaagtttgacttggagagactgatgaggtttc |
41659542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 41660034 - 41659948
Alignment:
| Q |
14 |
ttattaatttgtgattgtgtccataaaatatttctcctcggaagccacacttataattcactttactcttccctctgtttctatacgttgacagtggt |
111 |
Q |
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| T |
41660034 |
ttattaatttgtgattgtgtccataaaatatttctcctcggaagccac-----------actttactcttccctctgtttctatacgttgacagtggt |
41659948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 503
Target Start/End: Original strand, 41687576 - 41687772
Alignment:
| Q |
307 |
atggaacataaacccaaaatcgaacctgggatgtgttcgaatgaccatagaaacttgaaagacatgagcattcaggaacttgtttcggtgtcgcgtacag |
406 |
Q |
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| T |
41687576 |
atggagcatcaacccaaaactgaacctgggttgagttcgagtgaccatagaaatttggaagacatgagcattcatgaactggtttctgtgttacgcacat |
41687675 |
T |
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| Q |
407 |
cgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgagagactacagacagagattctgcattttcaagagaagtttga |
503 |
Q |
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| T |
41687676 |
cgtttctaacagaagactttgataatgttgaagaggttttagtgactagagataagaaactgcaaacgaaaattctacatcttcaagagaagtttga |
41687772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 348 - 468
Target Start/End: Complemental strand, 41709093 - 41708973
Alignment:
| Q |
348 |
tgaccatagaaacttgaaagacatgagcattcaggaacttgtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggtttta |
447 |
Q |
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| T |
41709093 |
tgaccatatgaacttggaaggcatgaacattcaggaactggtgttggtgttgcgaacaacatttctgacagaacagtttgatagaattgaagaggtttta |
41708994 |
T |
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| Q |
448 |
gtgagtagatatgagagacta |
468 |
Q |
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| T |
41708993 |
gtgagtagatataagagacta |
41708973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 468
Target Start/End: Complemental strand, 41718154 - 41718045
Alignment:
| Q |
359 |
acttgaaagacatgagcattcaggaacttgtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagata |
458 |
Q |
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| T |
41718154 |
acttggaaggcatgaacgttcaggaactggtgtcggtgttgcgaacagcatttctgacagaagaatttgatagaattgaagggattttagtgagtagata |
41718055 |
T |
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| Q |
459 |
tgagagacta |
468 |
Q |
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| T |
41718054 |
taagagacta |
41718045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 368 - 463
Target Start/End: Original strand, 14682286 - 14682381
Alignment:
| Q |
368 |
acatgagcattcaggaacttgtttcggtgtcgcgtacagcgtttcggacagaacagtttgatgaacttgaaaaggttttagtgagtagatatgaga |
463 |
Q |
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| T |
14682286 |
acatgagcattcaagatttggtttcagttttgcgtacagcgtttctgacagaacaatttgatagtgttgaagaaattttagtgagtagatatgaga |
14682381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 526
Target Start/End: Complemental strand, 41686585 - 41686537
Alignment:
| Q |
478 |
attctgcattttcaagagaagtttgacttggagagactgatgaggtttc |
526 |
Q |
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| T |
41686585 |
attctacatcttcaagagaagtttgaattggagagactaacgaggtttc |
41686537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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