View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1609_low_12 (Length: 236)
Name: NF1609_low_12
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609_low_12 |
 | |
|
| [»] scaffold0103 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0103 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 6314 - 6101
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
6314 |
agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa |
6215 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6214 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
6115 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
6114 |
aaatgatatccatg |
6101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 2633695 - 2633908
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2633695 |
agaaccaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtgttccaaagaagttagcaaaaa |
2633794 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2633795 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
2633894 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
2633895 |
aaatgatatccatg |
2633908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 12082828 - 12083029
Alignment:
| Q |
6 |
ggagaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaa |
105 |
Q |
| |
|
|||||| ||||||| ||| ||| ||||||||| |||| ||||||||||||||||||| ||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
12082828 |
ggagaaccaaaggttattatcattcaaatttcacacgtagccatatttatgagtcctgcacctaatgaaatcagttcaatattccaaagaagttagcaaa |
12082927 |
T |
|
| Q |
106 |
aatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaa |
205 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
12082928 |
aatctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattcttaaaattacttaatgatcaa |
12083027 |
T |
|
| Q |
206 |
gc |
207 |
Q |
| |
|
|| |
|
|
| T |
12083028 |
gc |
12083029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 220
Target Start/End: Complemental strand, 871919 - 871795
Alignment:
| Q |
96 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
195 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
871919 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact |
871820 |
T |
|
| Q |
196 |
tggtgatcaagcaaatgatatccat |
220 |
Q |
| |
|
||||| |||||||| || ||||||| |
|
|
| T |
871819 |
tggtgttcaagcaactgctatccat |
871795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 12808889 - 12808676
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808889 |
agaaccaaaggtcattgtcactcaaatttcgcacgcaaccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
12808790 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12808789 |
tctcactggtttaaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
12808690 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
12808689 |
aaatgatatccatg |
12808676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 37433118 - 37433331
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||| |||| || ||||||||||| |||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
37433118 |
agaaccaaaggttattgtcattcaaatttcacacgtagacatatttatgattcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
37433217 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| || ||| ||||||||| |
|
|
| T |
37433218 |
tctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacagacaacaaccaaattcttaaagttccttaatgatcaagc |
37433317 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37433318 |
aaatgatatccatg |
37433331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 276290 - 276414
Alignment:
| Q |
96 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
195 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| |||| ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
276290 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaatgacaaagaaaaataacacaaacagcaaccaaagttttaaaattact |
276389 |
T |
|
| Q |
196 |
tggtgatcaagcaaatgatatccat |
220 |
Q |
| |
|
||||| |||||||| || ||||||| |
|
|
| T |
276390 |
tggtgttcaagcaactgctatccat |
276414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 8 - 221
Target Start/End: Complemental strand, 21838416 - 21838205
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
21838416 |
agaaccaaaggttattgtcattcaaatttaacacgtagccatatttatgagtcctacacctaatgaaatcagttcaatattccaaagaagttagcaaaaa |
21838317 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| | ||||||| |
|
|
| T |
21838316 |
tctaactggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacagcaaccaaattc-taaaattactt-atcatcaagc |
21838219 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21838218 |
aaatgatatccatg |
21838205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 4806909 - 4807016
Alignment:
| Q |
113 |
ctggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaaatg |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||||||||| | |||||||||||| |
|
|
| T |
4806909 |
ctggtttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaacaaccaaattc-taaaattacttaatcatcaagcaaatg |
4807007 |
T |
|
| Q |
213 |
atatccatg |
221 |
Q |
| |
|
||||||||| |
|
|
| T |
4807008 |
atatccatg |
4807016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 2e-60; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 32447217 - 32447430
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| ||||||| ||||||| |||||||| || | |||| ||| | ||||||||||| || ||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
32447217 |
agaaccaaaggttattgtcaatcaaatttaacatgtagccgtatctttgagtcctacaactaatgaaatcagttcaatatttcaaagaagttagcaaaaa |
32447316 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
32447317 |
tctaactgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagc |
32447416 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
32447417 |
aaatgatatccatg |
32447430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 221
Target Start/End: Original strand, 27261031 - 27261244
Alignment:
| Q |
8 |
agaagcaaaggtcattgtcactcaaatttcgcacgcagccatatttatgagtcctacacctcatggaatcagttcagtattccaaagaagttagcaaaaa |
107 |
Q |
| |
|
|||| ||||||| ||||||| | |||||| || | |||| ||| | ||||||||||| || ||| ||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
27261031 |
agaaccaaaggttattgtcattaaaatttaacatgtagccgtatctttgagtcctacaactaatgaaataagttcaatattccaaagaagttggcaaaaa |
27261130 |
T |
|
| Q |
108 |
tctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagc |
207 |
Q |
| |
|
||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| |
|
|
| T |
27261131 |
tctaactgatttcaaaaggaaataacaaaatcatgattcaatagcaaacaaaaataacacaaacaggaaccaaattcttaaaattacttaatgatcaagc |
27261230 |
T |
|
| Q |
208 |
aaatgatatccatg |
221 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
27261231 |
aaatgatatccatg |
27261244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 4637665 - 4637772
Alignment:
| Q |
110 |
tcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattacttggtgatcaagcaa |
209 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||| ||| |||||||| ||| |
|
|
| T |
4637665 |
tcactggtttaaaaaaaaaataccaaaatcatgattgaatagcaaacaaaaataacacaaacagcaaccaaatttttaaaatttcttagtgatcaaacaa |
4637764 |
T |
|
| Q |
210 |
atgatatc |
217 |
Q |
| |
|
|||||||| |
|
|
| T |
4637765 |
atgatatc |
4637772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 25127261 - 25127383
Alignment:
| Q |
96 |
agttagcaaaaatctcactggtttcaaaaagaaataacaaaatcatgattcaatagcaaacaaatataacacaaacagcaaccaggttcttaaaattact |
195 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||||||||| | |||| | | ||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
25127261 |
agttagtaataatctcactggtttcaaaaagaaacaacaaaatcatgttccaat--gacagaaaaataacacaaacagcaaccaaagttttaaaattact |
25127358 |
T |
|
| Q |
196 |
tggtgatcaagcaaatgatatccat |
220 |
Q |
| |
|
||||| |||||||| || ||||||| |
|
|
| T |
25127359 |
tggtgttcaagcaactgctatccat |
25127383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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