View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1609_low_13 (Length: 226)

Name: NF1609_low_13
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1609_low_13
NF1609_low_13
[»] chr4 (7 HSPs)
chr4 (1-226)||(18990587-18990813)
chr4 (34-143)||(45766147-45766257)
chr4 (53-145)||(31853478-31853570)
chr4 (71-133)||(20628734-20628796)
chr4 (153-214)||(48989508-48989569)
chr4 (39-119)||(26547090-26547171)
chr4 (72-132)||(5290707-5290767)
[»] chr5 (7 HSPs)
chr5 (67-215)||(23236694-23236841)
chr5 (153-215)||(192140-192202)
chr5 (154-215)||(31271067-31271128)
chr5 (153-215)||(23034940-23035002)
chr5 (39-112)||(31271696-31271769)
chr5 (43-120)||(20158954-20159031)
chr5 (153-214)||(28801486-28801547)
[»] chr6 (1 HSPs)
chr6 (12-120)||(22814867-22814976)
[»] chr3 (7 HSPs)
chr3 (67-181)||(29564989-29565102)
chr3 (19-212)||(8257012-8257205)
chr3 (53-130)||(38415627-38415705)
chr3 (71-142)||(19814967-19815038)
chr3 (69-120)||(33779126-33779177)
chr3 (42-119)||(385846-385923)
chr3 (153-214)||(27935358-27935419)
[»] chr7 (4 HSPs)
chr7 (53-213)||(44832137-44832296)
chr7 (41-111)||(6184576-6184646)
chr7 (71-120)||(32073146-32073195)
chr7 (53-142)||(32199565-32199654)
[»] scaffold0134 (1 HSPs)
scaffold0134 (1-144)||(17561-17705)
[»] chr2 (5 HSPs)
chr2 (65-118)||(30325477-30325530)
chr2 (37-130)||(37621867-37621961)
chr2 (153-213)||(771180-771240)
chr2 (1-57)||(15512312-15512368)
chr2 (53-141)||(26591305-26591393)
[»] chr8 (4 HSPs)
chr8 (71-119)||(40401347-40401395)
chr8 (53-144)||(378688-378779)
chr8 (67-144)||(9175385-9175464)
chr8 (162-214)||(15838465-15838517)
[»] chr1 (1 HSPs)
chr1 (153-214)||(3829163-3829224)


Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 18990587 - 18990813
Alignment:
Q  1 ttttgtgtaatgttatactttaacgtcgtaattatgcctgaaaaaactcatgaaaaattcaaattttaggtcacttttttggactacgtgtatattagag 100  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||| || |||||||||||||||||| |||| |||||||    
T  18990587 ttttgtgtaatgttatattttaacgtcgtaaatatgcctgaaaa-actcatgaaaaattcaaattctatgtcacttttttggactacatgtacattagag 18990685  T
Q  101 ggtaaaaaataagaagaatccgaaattacaaggctagaatata--tannnnnnnattttacaaggtcatttttcagacatagtatatattacagaattaa 198  Q
    ||||||||||||||| |||||||||||||||||||||||||||  |        |||||||| |||||||||||| |||||||||||||||||   ||||    
T  18990686 ggtaaaaaataagaataatccgaaattacaaggctagaatatatgtttctttttattttacagggtcatttttcaaacatagtatatattacaaggttaa 18990785  T
Q  199 tttaaataattaaccctgtttatttttt 226  Q
    ||||||||||||||||| ||||||||||    
T  18990786 tttaaataattaaccctatttatttttt 18990813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 34 - 143
Target Start/End: Complemental strand, 45766257 - 45766147
Alignment:
Q  34 atgcctgaaaaaactcatgaaa-aattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaag 132  Q
    |||| |||||||| |||||||| |||||||  |||||||||||||| |||||||   |||||||| ||||| |||||||||| ||||  |||||||||||    
T  45766257 atgcttgaaaaaaatcatgaaagaattcaatctttaggtcacttttctggactaaacgtatattatagggtcaaaaataagatgaatatgaaattacaag 45766158  T
Q  133 gctagaatata 143  Q
    |||||||||||    
T  45766157 gctagaatata 45766147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 31853570 - 31853478
Alignment:
Q  53 aaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatatata 145  Q
    ||||||||||  ||||| |||||||||||||| | | |||||||| ||||  |||||||||||||||   ||||||||||  |||||||||||    
T  31853570 aaaaattcaatctttagatcacttttttggaccaagagtatattatagggccaaaaataagaagaattttaaattacaagattagaatatata 31853478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 20628796 - 20628734
Alignment:
Q  71 tcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaagg 133  Q
    ||||| |||||||||| |||||||||| |||||||||||||| ||||||   |||||||||||    
T  20628796 tcactcttttggactaagtgtatattacagggtaaaaaataataagaatatcaaattacaagg 20628734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 48989569 - 48989508
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccc 214  Q
    |||||||| |||||||||||||||||| | |||||||||| || ||||| || |||||||||    
T  48989569 attttacagggtcatttttcagacataatgtatattacaggatcaatttgaacaattaaccc 48989508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 119
Target Start/End: Original strand, 26547090 - 26547171
Alignment:
Q  39 tgaaaaaactcatgaaaaa-ttcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaat 119  Q
    |||||||| |||||||||| |||||  | ||  |||||||||||||| ||| |||||||| || ||||||||||| ||||||    
T  26547090 tgaaaaaaatcatgaaaaaattcaatctctacatcacttttttggaccacgcgtatattatagtgtaaaaaataaaaagaat 26547171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 5290767 - 5290707
Alignment:
Q  72 cacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaag 132  Q
    ||||||| | |||| | ||||||||| | ||||||||||||||||||||  ||||||||||    
T  5290767 cacttttctagacttcatgtatattatatggtaaaaaataagaagaatctcaaattacaag 5290707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 23236694 - 23236841
Alignment:
Q  67 taggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatatatannnnnnnattttacaaggtca 166  Q
    ||||| |||||||||||||||| | |||||| |  |||||||||||||| |||   ||||||||||||||||||||||        |||| ||| |||||    
T  23236694 taggtgacttttttggactacgcgcatattatacagtaaaaaataagaataatttcaaattacaaggctagaatatat-gtgttttatttcacagggtca 23236792  T
Q  167 tttttcagacatagtatatattacagaattaatttaaataattaaccct 215  Q
    ||||||| ||||||| |||||||||| |  |||||||| ||||||||||    
T  23236793 tttttcaaacatagtgtatattacaggaacaatttaaacaattaaccct 23236841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 192202 - 192140
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccct 215  Q
    |||||||| |||||||||||||||||||| |||||||||   | |||||||| ||||||||||    
T  192202 attttacagggtcatttttcagacatagtgtatattacatggtcaatttaaacaattaaccct 192140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 215
Target Start/End: Complemental strand, 31271128 - 31271067
Alignment:
Q  154 ttttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccct 215  Q
    ||||||| |||||||||||| ||||||| |||||| ||| || |||||||| ||||||||||    
T  31271128 ttttacatggtcatttttcaaacatagtgtatatttcaggatcaatttaaacaattaaccct 31271067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 23034940 - 23035002
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccct 215  Q
    ||||||||  |||||||||||||| | || |||||||||| || ||||| |||||||||||||    
T  23034940 attttacagagtcatttttcagacttcgtgtatattacaggatcaatttcaataattaaccct 23035002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 31271769 - 31271696
Alignment:
Q  39 tgaaaaaactcatgaaa-aattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataa 112  Q
    ||||||||  ||||||| |||||||  | ||||||||||||| ||||||||||||||||| ||| ||||||||||    
T  31271769 tgaaaaaaaccatgaaataattcaacctctaggtcacttttt-ggactacgtgtatattataggataaaaaataa 31271696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 20159031 - 20158954
Alignment:
Q  43 aaaactcatgaaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatc 120  Q
    |||| ||| |||||||||||  | ||| ||||||||||||||||||| ||||||| || |  |||||||| |||||||    
T  20159031 aaaaatcaggaaaaattcaacctctagatcacttttttggactacgtatatattatagtgacaaaaataaaaagaatc 20158954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 28801547 - 28801486
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccc 214  Q
    ||||||||||||||||||||||| ||| | ||||||||||  | ||||| || |||||||||    
T  28801547 attttacaaggtcatttttcagatataatgtatattacagggtcaatttgaacaattaaccc 28801486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 120
Target Start/End: Original strand, 22814867 - 22814976
Alignment:
Q  12 gttatactttaacgtcgtaattatgcctgaaaaaactcatgaaaaattcaaattttaggtcacttttttggactacgtgtatattagagggt-aaaaaat 110  Q
    |||||| ||||||||| ||   |||||||||| || |||||||||||||||  |||| ||||| |||||||||||| ||||||||| || || |||||||    
T  22814867 gttatattttaacgtcctatacatgcctgaaataaatcatgaaaaattcaacctttatgtcacctttttggactacatgtatattatagagtcaaaaaat 22814966  T
Q  111 aagaagaatc 120  Q
    ||||||||||    
T  22814967 aagaagaatc 22814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 181
Target Start/End: Original strand, 29564989 - 29565102
Alignment:
Q  67 taggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatatatannnnnnnattttacaaggtca 166  Q
    ||||| |||||||| |||||||  ||||||| |||||||||||||||||||||   |||||||||||||| |||||||        ||||||||||||||    
T  29564989 taggttacttttttcgactacgcttatattatagggtaaaaaataagaagaatatcaaattacaaggctataatatat-gttttttattttacaaggtca 29565087  T
Q  167 tttttcagacatagt 181  Q
    ||||||| |||||||    
T  29565088 tttttcaaacatagt 29565102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 8257205 - 8257012
Alignment:
Q  19 tttaacgtcgtaattatgcctgaaaaaactcatgaaaaa-ttcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaaga 117  Q
    ||||||||| |||  ||| ||||||||| | |||||||| |||||  |||| |||| | |||||||||  |||||||||  ||||||||||||| || ||    
T  8257205 tttaacgtcttaaacatgtctgaaaaaaattatgaaaaaattcaacatttaagtcaatgttttggactgtgtgtatattgtagggtaaaaaatatgatga 8257106  T
Q  118 atccgaaattacaaggctagaatatatannnnnnnattttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaac 212  Q
    ||   ||||||||||||||||||||||        ||||||||  ||||||||||| ||||||| |||||||||   ||||||| || |||||||    
T  8257105 atatcaaattacaaggctagaatatat-gttttttattttacattgtcatttttcaaacatagtgtatattacaaggttaatttgaacaattaac 8257012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 38415627 - 38415705
Alignment:
Q  53 aaaaattcaaattttaggtcacttttttggactacgtgtatattagagggt-aaaaaataagaagaatccgaaattaca 130  Q
    |||| ||||| |||||||| | |||||||||||||| |||||||| ||||| |||||||||||||||||  ||||||||    
T  38415627 aaaatttcaacttttaggttatttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattaca 38415705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 142
Target Start/End: Original strand, 19814967 - 19815038
Alignment:
Q  71 tcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatat 142  Q
    |||||||||||||| |||  ||||||| ||||| |||||||| |||||||  |||||||| || ||||||||    
T  19814967 tcacttttttggacgacgcatatattatagggtcaaaaataacaagaatctcaaattacatggttagaatat 19815038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 120
Target Start/End: Complemental strand, 33779177 - 33779126
Alignment:
Q  69 ggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatc 120  Q
    |||||||||||||||||||  |||||||| | ||||||| ||||||||||||    
T  33779177 ggtcacttttttggactacacgtatattataaggtaaaatataagaagaatc 33779126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 385923 - 385846
Alignment:
Q  42 aaaaactcatgaaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaat 119  Q
    ||||| ||||||||||||||| || || ||||| |||||| |||  |||||||||| | ||| |||||| ||||||||    
T  385923 aaaaaatcatgaaaaattcaacttctaagtcacatttttgaactttgtgtatattatacggtcaaaaatgagaagaat 385846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 27935419 - 27935358
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccc 214  Q
    ||||||||||||| ||||||||||||| | ||||||||||  | ||||| || |||||||||    
T  27935419 attttacaaggtcttttttcagacataatttatattacagggtcaatttgaaaaattaaccc 27935358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 53 - 213
Target Start/End: Complemental strand, 44832296 - 44832137
Alignment:
Q  53 aaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatatatannnnnnn 152  Q
    ||||||||||  | ||| |||||||||||||| ||  |||||||| | ||||||||||||||||||||  ||||||||| | || ||||| ||           
T  44832296 aaaaattcaatctctagatcacttttttggaccacacgtatattaaaaggtaaaaaataagaagaatctcaaattacaaagttaaaatatgta-cttttt 44832198  T
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaacc 213  Q
    |||||||| |||||||||||||||||  ||||| |||||  || |||||||| ||||||||    
T  44832197 attttacatggtcatttttcagacatcatatattttacaagatcaatttaaacaattaacc 44832137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 6184576 - 6184646
Alignment:
Q  41 aaaaaactcatgaaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaata 111  Q
    |||||| |||| |||||||||| ||||  | ||||||| |||| ||||||||||||| |||||||||||||    
T  6184576 aaaaaaatcataaaaaattcaacttttcagacacttttctggattacgtgtatattaaagggtaaaaaata 6184646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 32073195 - 32073146
Alignment:
Q  71 tcacttttttggactacgtgtatattagagggtaaaaaataagaagaatc 120  Q
    |||||||||||||| |||||||||||| | ||| ||||||||||||||||    
T  32073195 tcacttttttggaccacgtgtatattacaaggtcaaaaataagaagaatc 32073146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 32199565 - 32199654
Alignment:
Q  53 aaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatat 142  Q
    |||||||||| || || ||||||||| | |||| | || |||||||||||||||||||||||| |||   ||||||||||| || |||||    
T  32199565 aaaaattcaatttctaagtcacttttatagacttcttgcatattagagggtaaaaaataagaataatatcaaattacaaggttaaaatat 32199654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0134 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 17705 - 17561
Alignment:
Q  1 ttttgtgtaatgttatactttaacgtcgtaattatgcctgaaaaaactcatgaaaaa-ttcaaattttaggtcacttttttggactacgtgtatattaga 99  Q
    |||||||||| | |||| |||||  || |||  ||| ||| ||||| |||||||||| ||||| || |||||| ||||||||||||||| |||||| | |    
T  17705 ttttgtgtaaagctatattttaatatcctaaacatgtctggaaaaaatcatgaaaaaattcaatttgtaggtcccttttttggactacgcgtatatcata 17606  T
Q  100 gggtaaaaaataagaagaatccgaaattacaaggctagaatatat 144  Q
     ||| ||| ||||||| |||   |||||||||||||| |||||||    
T  17605 cggttaaagataagaaaaataataaattacaaggctataatatat 17561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 30325530 - 30325477
Alignment:
Q  65 tttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaa 118  Q
    |||| |||||||||||||||| ||||||||||| || || ||||||||||||||    
T  30325530 tttaagtcacttttttggacttcgtgtatattatagagtcaaaaataagaagaa 30325477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 130
Target Start/End: Original strand, 37621867 - 37621961
Alignment:
Q  37 cctgaaaaaactcatgaaaaa-ttcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattaca 130  Q
    |||||||||| |||||||||| |||||    ||| |||||||||||||| ||  |||||||| ||||| |||| |||||||||||  ||||||||    
T  37621867 cctgaaaaaaatcatgaaaaaattcaataactagatcacttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaattaca 37621961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 213
Target Start/End: Complemental strand, 771240 - 771180
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaacc 213  Q
    |||||||| |||||||||||||||||| | ||||||||||  | ||||| || ||||||||    
T  771240 attttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaacc 771180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 15512312 - 15512368
Alignment:
Q  1 ttttgtgtaatgttatactttaacgtcgtaattatgcctgaaaaaactcatgaaaaa 57  Q
    |||||||||||||  || ||||||||| |||  ||||||||||||| ||||||||||    
T  15512312 ttttgtgtaatgtcgtattttaacgtcctaaacatgcctgaaaaaaatcatgaaaaa 15512368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 26591393 - 26591305
Alignment:
Q  53 aaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaata 141  Q
    ||||||||||  | ||| ||||||||| |||| | |  ||||||| ||||| |||||||||||||||  ||||||||| || |||||||    
T  26591393 aaaaattcaatctctagatcactttttgggaccaagcatatattatagggtcaaaaataagaagaatatgaaattacatggttagaata 26591305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 40401347 - 40401395
Alignment:
Q  71 tcacttttttggactacgtgtatattagagggtaaaaaataagaagaat 119  Q
    ||||||||||||||||||  ||||||| ||||| |||||||||||||||    
T  40401347 tcacttttttggactacgcatatattatagggttaaaaataagaagaat 40401395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 144
Target Start/End: Complemental strand, 378779 - 378688
Alignment:
Q  53 aaaaattcaaattttaggtcacttttttggactacgtgtatattagagggtaaaaaataagaagaatccgaaattacaaggctagaatatat 144  Q
    ||||||||||  | || ||||| |||||  |||||| |||||||| ||||| |||||||||||||| |   |||||||| ||||||||||||    
T  378779 aaaaattcaacctctatgtcacatttttatactacgcgtatattatagggtcaaaaataagaagaaactcgaattacaatgctagaatatat 378688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 9175464 - 9175385
Alignment:
Q  67 taggtcacttttttggactacgtgtatattagagggta--aaaaataagaagaatccgaaattacaaggctagaatatat 144  Q
    |||||||||| ||||||| || | ||||||| ||||||  |||||||||||||||   ||||||||||| || |||||||    
T  9175464 taggtcacttgtttggacaacatatatattatagggtataaaaaataagaagaatatcaaattacaaggttataatatat 9175385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 15838517 - 15838465
Alignment:
Q  162 ggtcatttttcagacatagtatatattacagaattaatttaaataattaaccc 214  Q
    |||||||||||| ||||||  |||||||||| || |||||||| |||||||||    
T  15838517 ggtcatttttcaaacatagagtatattacaggataaatttaaacaattaaccc 15838465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 214
Target Start/End: Complemental strand, 3829224 - 3829163
Alignment:
Q  153 attttacaaggtcatttttcagacatagtatatattacagaattaatttaaataattaaccc 214  Q
    |||||||| |||||||||||||||||| | ||||||||||  | ||||| || |||||||||    
T  3829224 attttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaaccc 3829163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University