View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609_low_2 (Length: 453)
Name: NF1609_low_2
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 12 - 442
Target Start/End: Original strand, 31781098 - 31781528
Alignment:
| Q |
12 |
attatactactacttactc--actcagtattactctcacttcacaacataaaaccacttttctaatttataaacctcaccttcttccatcattaatatca |
109 |
Q |
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| T |
31781098 |
attatactactacttactctcactcagtagtactc--acttcacaacataaaaccacttttctaatttataaacctcaccttcttccatcattaatatca |
31781195 |
T |
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| Q |
110 |
aaattattttctgttattccatcgttttatgaatacaaacttcaaaccatgccgacaccggtatcatcagcaagacaatgcttaacaccagaagcaatcc |
209 |
Q |
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| T |
31781196 |
aaattattttctgttattccatcgttttatgaatacaaacttcaaaccatgccaacaccagtatcatcagcaagacaatgcttaacaccagaagcaatcc |
31781295 |
T |
|
| Q |
210 |
aagccttaaacgacgcagtagccgtcgcaaaacgccgcggacacgcacaaacaacatcgcttcacgcaatatccgctttgttatctcttccatcttcttc |
309 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31781296 |
aagctttaaacgacgcagtagccgtcgcaaaacgccgcggacacgcacaaacaacctcgcttcacgcaatatccgctttgttatctcttccatcttcttc |
31781395 |
T |
|
| Q |
310 |
aatcctccgcgatgcatgttctcgttcgagaaactcggcttactcaccacgcttacagttcaaagcacttgatctttgtctctcagtatcacttgaccgt |
409 |
Q |
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| T |
31781396 |
aatcctccgcgacgcatgttctcgttcgagaaactcggcttactcaccacgcttacagttcaaagcacttgatctttgtctctcagtatcacttgaccgt |
31781495 |
T |
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| Q |
410 |
tcaccttcttcgcataacaacgtttcatctgat |
442 |
Q |
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| T |
31781496 |
tcaccttcttcgcataacaacgtttcatctgat |
31781528 |
T |
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Back To:
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Target: chr7 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 252 - 438
Target Start/End: Complemental strand, 19636367 - 19636181
Alignment:
| Q |
252 |
acgcacaaacaacatcgcttcacgcaatatccgctttgttatctcttccatcttcttcaatcctccgcgatgcatgttctcgttcgagaaactcggctta |
351 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
19636367 |
acgcacaaacaacatcgattcatgcaatatccgctttgttatcccttccatcttcttcaatcctccgcgacgcatgttctcgttggagaaactcggctta |
19636268 |
T |
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| Q |
352 |
ctcaccacgcttacagttcaaagcacttgatctttgtctctcagtatcacttgaccgttcaccttcttcgcataacaacgtttcatc |
438 |
Q |
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| T |
19636267 |
ctcaccacgcttacagttcaacgcacttgatctttgtctctcagtatcacttgaccgttcaccttcttcgcataacaacgtttcatc |
19636181 |
T |
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