View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1609_low_6 (Length: 292)
Name: NF1609_low_6
Description: NF1609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1609_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 51729776 - 51729517
Alignment:
| Q |
20 |
gtatagacaaatttataagcaataggtatgccaaccttgttgacgtgcggtatatatgggaccttactagatagataattagcacaatggcatgaagata |
119 |
Q |
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| T |
51729776 |
gtatagacaaatttataagcaataggtatgccaaccttgttgacgtgcggtatatacgggaccttactagatagataattagcacaatggcatgaagata |
51729677 |
T |
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| Q |
120 |
taatttgattctcactacgtttccttccccttaatggacatagaaagagaagaaagtgatagagagatcattaccatagatctactacgtgataagtcga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
51729676 |
taatttgattctcactacgtttccttccccttaatggacatagaaagagaagaaagtgacagagagatcattaccatagatctactacgtgataagtcga |
51729577 |
T |
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| Q |
220 |
acgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaaggtctgtg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51729576 |
acgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaaggtctgtg |
51729517 |
T |
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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 351475 - 351423
Alignment:
| Q |
219 |
aacgagatcatcatacataaatgaacatcctgtctagcatattttatccgaaa |
271 |
Q |
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||||||| |||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
351475 |
aacgagaccatcatacataaatgaacatcctgccgagcatattttatccgaaa |
351423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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