View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610-Insertion-1 (Length: 877)
Name: NF1610-Insertion-1
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610-Insertion-1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 248 - 877
Target Start/End: Original strand, 51256368 - 51256999
Alignment:
| Q |
248 |
taaaaccctaatgataatacccttattcttattttttctgaattgtgatggatttatttaggttgcttcagtctcctcaatgataggattggtatacatg |
347 |
Q |
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| T |
51256368 |
taaaaccctaatgataatacccttattcttattttttctgaattgtgatggatttatttaggttgcttcagtctcctcaatgataggattggtctacatg |
51256467 |
T |
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| Q |
348 |
agaattttccttaaggaaagtgcacctatgaggcagccattattgaaagaggcagaggaaccatgcattgaacagtgtgaggatgatttgccacaaagaa |
447 |
Q |
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| T |
51256468 |
agaattttccttaaggaaagtgcacctatgaggcagccattattgaaagaggcagaggaaccatgcattgaacagtgtgaggatgatttgccacaaagaa |
51256567 |
T |
|
| Q |
448 |
catttaagaaactaccttcaatgggggacttaatttgtttgcttaagtgtaggtaagtaaggcagtgaagaaatgaattttgcattggtatatatattat |
547 |
Q |
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| T |
51256568 |
catttaagaaactaccttcaatgggggacttaatttgtttgcttaagtgtaggtaagtaaggcagtgcagaaatgaattttgcattggtata-----tat |
51256662 |
T |
|
| Q |
548 |
agattgaaggtattaattcatttttgacaaaatctctttgcgatcatcacctattacgaactcaagcaattaaagacctgttcgaatttaacttatttga |
647 |
Q |
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| T |
51256663 |
agattgaaggtattaattcatttttgacaaaatctctttgcgatcatcacctattaccaactcaagcaattaaagacctgttcgaatttaacttatttga |
51256762 |
T |
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| Q |
648 |
atttatctactagcataagttcttgttgactgttcaaaagagcttatagaaacaactgacatgttcataagcctttttcagttaattttctttcataa-- |
745 |
Q |
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| T |
51256763 |
atttatctactagcataagtccttgtagactgttcaggagagcttatagaaacaattgacatgttcataagcctttttcagttaattttctttcataatc |
51256862 |
T |
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| Q |
746 |
----taggatagcttatgaaaacaacttatacataagcacttaaatgacaaacgcttaattgaacagttatccaaacaatgctcaaatatgatagggttg |
841 |
Q |
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| T |
51256863 |
tcgctaggatagcttatgaaaacaacttatacataagcacttaaatgacaaacgcttaattgaacagttatccaaacaatgctcaaatatgatagagttg |
51256962 |
T |
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| Q |
842 |
ttgatcttacaagc-ttacttttgcagccctacattc |
877 |
Q |
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| T |
51256963 |
ttgatcttacaagctttacttttgcagccctacattc |
51256999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 5 - 247
Target Start/End: Original strand, 51255879 - 51256122
Alignment:
| Q |
5 |
acacaaattgtcactcaaaaccatatataaatgcttctcagctaatcatttgattnnnnnnnn-taacgtgttttaattttgatttacttattattaggc |
103 |
Q |
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| T |
51255879 |
acacaaattgtcactcaaaaccatatataaatgcttctcagctaatcatttgattaaaaaaaaataacgtgttttaattttgatttacttattattaggc |
51255978 |
T |
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| Q |
104 |
cgatatggttccagttggaaaacgagcatcagcatttggaatactagctggtgttggatctgcatcgtttgttggcggaacattagctgctagattccta |
203 |
Q |
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| T |
51255979 |
cgatatagttccagttggaaaacgagcatcagcatttggaatactagctggtgttggatctgcatcgtttgttggcggaacattagctgctagattccta |
51256078 |
T |
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| Q |
204 |
tccgcggcattaacatttcaggttacaaagtaaaatcaaatttg |
247 |
Q |
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| T |
51256079 |
tccgcggcattaacatttcaggttacaaagtaaaatcaaatttg |
51256122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 665
Target Start/End: Complemental strand, 40174782 - 40174753
Alignment:
| Q |
636 |
taacttatttgaatttatctactagcataa |
665 |
Q |
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| T |
40174782 |
taacttatttgaatttatctactagcataa |
40174753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 80 - 186
Target Start/End: Complemental strand, 5104549 - 5104445
Alignment:
| Q |
80 |
attttgatttacttattattaggccgatatggttccagttggaaaacgagcatcagcatttggaatactagctggtgttggatctgcatcgtttgttggc |
179 |
Q |
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| T |
5104549 |
attttgatttacttattattagacagatacggatccagttggaaa-caagcatcggcatttggaatacttgctggtgttggatcggcatcattt-ttggt |
5104452 |
T |
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| Q |
180 |
ggaacat |
186 |
Q |
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| T |
5104451 |
ggaacat |
5104445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 749 - 784
Target Start/End: Complemental strand, 37138313 - 37138278
Alignment:
| Q |
749 |
gatagcttatgaaaacaacttatacataagcactta |
784 |
Q |
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| T |
37138313 |
gatagcttatgaaaataacttatacataagcactta |
37138278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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