View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610-Insertion-3 (Length: 692)
Name: NF1610-Insertion-3
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 689
Target Start/End: Original strand, 50177190 - 50177888
Alignment:
| Q |
7 |
aattacaactttgtatcaatgatcaactttctttttgcttacacacaatttggtatcaataaagtgattatgatgatgcataaagaactggagg------ |
100 |
Q |
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| T |
50177190 |
aattactactttgtatcaatgatcaactttctttttgcttacacacaatttggtatcaataaagtgattatgatgatgcataaagaactggaagaacttg |
50177289 |
T |
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| Q |
101 |
-----------gaatcctccattgtatgcaataagtaagcaaaactaatatttattgttctttagcataaagtaaaaagagggtctaaattttgattaat |
189 |
Q |
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| T |
50177290 |
aaatagtaggtgaatcctccattgtatgcaataagtaagcaaaactaatatttatttttctttagcataaagtaaaaagagggtctaaattttgattaat |
50177389 |
T |
|
| Q |
190 |
tttttataatcatctaaataagatgggttatccattgatgttttgcagtgttatttcaagcgttgaatctgttcctgatcgtaacattatattaaaatta |
289 |
Q |
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| T |
50177390 |
tttttataatcatctaaataagatgggttatccattgatgttttgcagtgttatttcaagcgttgaatctgttcctgatcgtaacattatattaaaatta |
50177489 |
T |
|
| Q |
290 |
tgaccaaattgtgtttatatttatgtactagcaggactagaggtccagtagatgctagctgggatcgatggttcgagggatgcaatcacaattcaacaag |
389 |
Q |
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| T |
50177490 |
tgaccaaattgtgtttatatttatgtactagcaggactagaggtcaagtagatgctagctgggatcgatggttcgagggatgcaatcacaattcaacaag |
50177589 |
T |
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| Q |
390 |
tcataatcgatggattcatagttgatagttcaacatcctgctgcaactgcaagagaaatgatggctaagttattgcaatacaatgataaataataataaa |
489 |
Q |
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| T |
50177590 |
tcataatcgatggattcatagttgatagttcaacatcctgctgcaactgcaagataaatgatggctaagttattgcaatacaatgattaataataataaa |
50177689 |
T |
|
| Q |
490 |
atatccttatgcgttattttttcctttatacttggttgttgttgttctaatatgttttgtttgcaagatcaatcactg------ttctacttctacatga |
583 |
Q |
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| T |
50177690 |
atttccttatgcgttattttttcctttatacttggttgttgttgttctaatatgttttgtttgcaagatcaatcactgttctacttctacttctacatga |
50177789 |
T |
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| Q |
584 |
catttctataaaatgaaaaataactatataaagnnnnnnnnaagcaaaaatagagtgcactgcacatacatcatatgacagaaaaggaaggcatccaaca |
683 |
Q |
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| T |
50177790 |
catttttataaaatgaaaaataactatat--agttttttttaagcaaaaatagag-----tgcacatacatcatatgacagaaaaggaaggcatccaact |
50177882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 54322137 - 54322078
Alignment:
| Q |
211 |
gatgggttatccattgatgtt-ttgcagtgttatttcaagcgttgaatctgttcctgatc |
269 |
Q |
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| T |
54322137 |
gatgggttatccattgatgttcttgcagtgttatttcaagcgttgaatctgttcttgatc |
54322078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 403 - 468
Target Start/End: Complemental strand, 54321866 - 54321804
Alignment:
| Q |
403 |
attcatagttgatagttcaacatcctgctgcaactgcaagagaaatgatggctaagttattgcaat |
468 |
Q |
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| T |
54321866 |
attcatagttgatagttcaacattctgc---aactgcaagagaaataatggctaagatattgcaat |
54321804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 54322031 - 54321999
Alignment:
| Q |
276 |
ttatattaaaattatgaccaaattgtgtttata |
308 |
Q |
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| T |
54322031 |
ttatattaaaattatgaccaaattgggtttata |
54321999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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