View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1610-Insertion-4 (Length: 505)
Name: NF1610-Insertion-4
Description: NF1610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1610-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 7 - 505
Target Start/End: Original strand, 39128376 - 39128877
Alignment:
| Q |
7 |
atatattttgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgctttgtgtcaatacaatagtatcact |
106 |
Q |
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| T |
39128376 |
atatattttgttaatggtagtagtaaatgtttgttttatttttgttagtgagagggtttcaaaaccattttatgctctgtgtcaatacaatagtatcact |
39128475 |
T |
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| Q |
107 |
gtgtttatgtttgannnnnnnnnnnnnnnnacccttgttttgtaattactacatgtctatttccatggtgtatatcattttgaactgtgtttatgctttg |
206 |
Q |
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| T |
39128476 |
ttgtttatgtttgattttttgtttttttt-acccttgttttgtaattactacatgtctatttccatggtgtttatcattttgaactgtgtttatgctttg |
39128574 |
T |
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| Q |
207 |
tgtcaacacaatagtatcactgtgtttatgtttcatttcgtttgaaatttccttaacaaggtttcatttttgtgtggtccgagtgaatgccatagttgag |
306 |
Q |
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| T |
39128575 |
tgtcaacacaatagtatcactgtgtttatgtttgattttgtttgaaatttccttaacaaggtttcatttttgtgtggtctgagtgaatgccatagttgag |
39128674 |
T |
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| Q |
307 |
aaattgattttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattg----ttactactaggtgtttatgttta |
402 |
Q |
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| T |
39128675 |
aaattgattttaagggttttgcttgtttcaactatgttcaatttgaaaccaccaaataaacttatcaacattgttacttactaccaggtgtttatgttta |
39128774 |
T |
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| Q |
403 |
ttcttattttcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttaactttgtttttcctgattagatttttaaatgt |
502 |
Q |
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| T |
39128775 |
ttcttattttcttttatctgttggcaatgtatatatgttgttagagcggtggattctgttttcacttacctttgtttttcctgattagatttttaaatgt |
39128874 |
T |
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| Q |
503 |
cta |
505 |
Q |
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| T |
39128875 |
cta |
39128877 |
T |
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