View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16100_high_3 (Length: 410)
Name: NF16100_high_3
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16100_high_3 |
 | |
|
| [»] scaffold0372 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 713673 - 714048
Alignment:
| Q |
16 |
atgaaggcacaacaaaagaatacaacaattagaatatttctcaaaaatttacattttcttttgaaatttgtaaatatagtttaacatgcagaatcatcat |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
713673 |
atgaaggcacaacaaaagaatacaacaattagaatatttcccaaaaatttacattttcttttgaaatttgtaaatatagtttaacatgcagaatcatcat |
713772 |
T |
|
| Q |
116 |
aaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttctaccggtgcttgcatgctatttagga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
713773 |
aaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttctaccggtgcttgcatgctatttagga |
713872 |
T |
|
| Q |
216 |
atgattgatgatttacaacaccaaaaatccaaaaaggtacataaaagcatgcagaaacttattaaataaatagatcaatgaggtggtttttctttccttc |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
713873 |
atgattgatgatttacaacaccaaaaatccaaaaaggtacataaaagcatgcagaaacttattaaataaatagatcaatgaggtggtttttctttccttc |
713972 |
T |
|
| Q |
316 |
ttactatttatactgaaaagcaaaaacaattaaaccttgataagaatgatcagaaacttattaaacaaggcatgaa |
391 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
713973 |
ttactatttatactgaaaagcaaaaacaattaaaccttgataagaatgatcagaaacttattaaacaaggcatgaa |
714048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 21368658 - 21368540
Alignment:
| Q |
91 |
atagtttaacatgcagaatcatcataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttct |
190 |
Q |
| |
|
||||||||||| |||| || ||||| ||||||||||||||||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
21368658 |
atagtttaacacccagactcgacataagattaagggtcaataacataaaatggcaatccatctaaacacccattt-aaaaagaaaaccaacagaatttct |
21368560 |
T |
|
| Q |
191 |
accggtgcttgcatgctatt |
210 |
Q |
| |
|
| | |||||||||||||||| |
|
|
| T |
21368559 |
aacagtgcttgcatgctatt |
21368540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 3763518 - 3763868
Alignment:
| Q |
16 |
atgaaggcacaacaaaagaatacaacaattagaatatttctcaaaaatttacattttcttttgaaatttgtaaatatagtttaacatgcagaatcatc-- |
113 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3763518 |
atgaagacacaacaaaagaatacaacaattagaatatttcccaaaaatttacattttcttttgaaacttgtaaatatagtttaacatgcagaatcatcca |
3763617 |
T |
|
| Q |
114 |
--ataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttctaccggtgcttgcatgctattt |
211 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3763618 |
tcataaaattaagggtcaaaaacataaaatggaaatctatttaaacaccaatttaaaaaagaaaactaacaaaatttctaccggtgcttgcatgctattt |
3763717 |
T |
|
| Q |
212 |
aggaatgattgatgatttacaacaccaaaaatccaaaaaggtacataaaagcatgcagaaacttattaaataaatagatcaatgaggtggtttttctttc |
311 |
Q |
| |
|
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3763718 |
aagaatgattgatgacttacaacaccaaaaatccaaaaaggtacataaaagcatgtagaaacttattaaataaatagatcaatgaggtggtttttctttc |
3763817 |
T |
|
| Q |
312 |
cttcttactatttatactgaaaagcaaaaacaattaaaccttgataagaat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3763818 |
cttcttactatttatactgaaaagcaaaaacaattaaaccttgataagaat |
3763868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0372 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 210
Target Start/End: Complemental strand, 13183 - 13065
Alignment:
| Q |
91 |
atagtttaacatgcagaatcatcataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttct |
190 |
Q |
| |
|
||||||||||| |||| || ||||| ||||||||||||||||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
13183 |
atagtttaacacccagactcgacataagattaagggtcaataacataaaatggcaatccatctaaacacccattt-aaaaagaaaaccaacagaatttct |
13085 |
T |
|
| Q |
191 |
accggtgcttgcatgctatt |
210 |
Q |
| |
|
| | |||||||||||||||| |
|
|
| T |
13084 |
aacagtgcttgcatgctatt |
13065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 91 - 210
Target Start/End: Original strand, 23899911 - 23900029
Alignment:
| Q |
91 |
atagtttaacatgcagaatcatcataaaattaagggtcaataacataaaatggaaatctatttaaacaccaatttaaaaaagaaaaccaacaaaatttct |
190 |
Q |
| |
|
||||||||||| |||| || ||||| ||||||||||||||||||||||||| |||| || |||||||| |||| |||||||||||||||| ||||||| |
|
|
| T |
23899911 |
atagtttaacacccagactcgacataagattaagggtcaataacataaaatggcaatccatctaaacacccattt-aaaaagaaaaccaacagaatttct |
23900009 |
T |
|
| Q |
191 |
accggtgcttgcatgctatt |
210 |
Q |
| |
|
| | |||||||||||||||| |
|
|
| T |
23900010 |
aacagtgcttgcatgctatt |
23900029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University