View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16100_low_1 (Length: 687)
Name: NF16100_low_1
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16100_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 21 - 456
Target Start/End: Complemental strand, 10028441 - 10028006
Alignment:
| Q |
21 |
gaaagatatataaacgatataaaaatccataacattttagttcaagtgttcccttttctcagtttctgaggataaacattagtgtattaaataagatatt |
120 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10028441 |
gaaagatatataaacgatataaaaatccgtaacattttagttcaagtgttcccttttctcagtttctgaggataaacattagtgtataaaataagatatt |
10028342 |
T |
|
| Q |
121 |
tgtaatgaaagaaaatgattttggaaagcctgaaacaccagccagaagtaatagatcgtcaatgatatgtctagtaacattaattcaaatcaataaccat |
220 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10028341 |
tgtaaagaaagaaaatgattttggaaagcctgaaacaccagccagaagtaatagatcgtcaatgatatgtctagtaacattaattcaaatcaataaccat |
10028242 |
T |
|
| Q |
221 |
taaggaagccaccctgctacctctatcgccacatgaattgaatatgccattaagcatatatatttcataattattcaagcaagtgatgtaacaaaagtaa |
320 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10028241 |
taaggaagccaccctgctacctctatcaccacatgaattgaatatgccattaagcatacatatttcataattattcaagcaagtgatgtaacaaaagtaa |
10028142 |
T |
|
| Q |
321 |
gcacataaattaaaattaattgtgaaaatcttcatgttctactatccggaaaattataaatcaacacatttacatagtgtttcattcaccattgattgaa |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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| T |
10028141 |
gcacataaattaaaattaattgtgaaaatcttcatgttctactatccggaaaattataaatcaacacatctacatagtgtttcattcaccatttattgaa |
10028042 |
T |
|
| Q |
421 |
aatttaacaagttaagatatgtaacacacctaatat |
456 |
Q |
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| T |
10028041 |
aatttaacaagttaagatacgtaacacacctaatat |
10028006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 328 - 452
Target Start/End: Complemental strand, 10047986 - 10047861
Alignment:
| Q |
328 |
aattaaaattaattgtgaaaatcttcatgttctactatccggaaaattataaatcaacacatttacatagtgtttcattcaccattgattgaaaatttaa |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
10047986 |
aattaaaattaattgtgaaaatcttcatgttctactatccggaaaatattaaatcaacacatctacatagtgtttcattcaccattgattgaaaatctaa |
10047887 |
T |
|
| Q |
428 |
caagttaaga-tatgtaacacaccta |
452 |
Q |
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|||||||||| || |||||||||||| |
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| T |
10047886 |
caagttaagattacgtaacacaccta |
10047861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 10050354 - 10050276
Alignment:
| Q |
21 |
gaaagatatataaacgatataaaaatccataacattttagttcaagtgttcccttttctcagtttctgaggataaacat |
99 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10050354 |
gaaagatatataaacgatataaaaatccgtaacattttagttcaagtgttcccttttctcagtttctgaggataaacat |
10050276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 602 - 673
Target Start/End: Complemental strand, 10027849 - 10027778
Alignment:
| Q |
602 |
taggagcgatcaacttacaatggtgtaatacttgaatactattacactattgaacaacgttatgaaaattct |
673 |
Q |
| |
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|
| T |
10027849 |
taggagcgatcaacttacaatggtgtaatacttgaatactattacactgttgaacaacgttatgaaaattct |
10027778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 602 - 673
Target Start/End: Complemental strand, 10047702 - 10047631
Alignment:
| Q |
602 |
taggagcgatcaacttacaatggtgtaatacttgaatactattacactattgaacaacgttatgaaaattct |
673 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10047702 |
taggagcgatcaacttacaatggtgtaatacttgaatactattacactgttgaacaacgttatgaaaattct |
10047631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 541
Target Start/End: Complemental strand, 10027965 - 10027910
Alignment:
| Q |
486 |
cataacacagctatatctcatttctacgctgaaattattttatcatgaattagtac |
541 |
Q |
| |
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|
| T |
10027965 |
cataacacagctatatctcatttctacgctgaaattatttgatcatgaattagtac |
10027910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 486 - 541
Target Start/End: Complemental strand, 10047818 - 10047763
Alignment:
| Q |
486 |
cataacacagctatatctcatttctacgctgaaattattttatcatgaattagtac |
541 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10047818 |
cataacacagctatatctcatttctacgctgaaattatttgatcatgaattagtac |
10047763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 215 - 302
Target Start/End: Complemental strand, 10062326 - 10062239
Alignment:
| Q |
215 |
aaccattaaggaagccaccctgctacctctatcgccacatgaattgaatatgccattaagcatatatatttcataattattcaagcaa |
302 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||| ||||||||| |||| || ||||||||| ||||||||||| ||||||||| |
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| T |
10062326 |
aaccattaaggaagccacactgctacctctatcaccatatgaattgagtatgaaatgaagcatataaatttcataattcttcaagcaa |
10062239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 337 - 432
Target Start/End: Complemental strand, 10062148 - 10062053
Alignment:
| Q |
337 |
taattgtgaaaatcttcatgttctactatccggaaaattataaatcaacacatttacatagtgtttcattcaccattgattgaaaatttaacaagt |
432 |
Q |
| |
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|||||| ||||||| || ||||| |||||||||||| ||||||||||| |||| ||| |||||| ||||||| |||| | |||||||||||||| |
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| T |
10062148 |
taattgggaaaatcctcctgttcaactatccggaaagttataaatcaaaacatctacttagtgtgtcattcatcattactcaaaaatttaacaagt |
10062053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 36 - 72
Target Start/End: Complemental strand, 10062381 - 10062345
Alignment:
| Q |
36 |
gatataaaaatccataacattttagttcaagtgttcc |
72 |
Q |
| |
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|||||| || ||||||||||||||||||||||||||| |
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| T |
10062381 |
gatatagaagtccataacattttagttcaagtgttcc |
10062345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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