View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16100_low_10 (Length: 247)
Name: NF16100_low_10
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16100_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 49 - 237
Target Start/End: Complemental strand, 40083140 - 40082953
Alignment:
| Q |
49 |
tttttgcaaaagtaaactccaatgtggcaatgcaaataagagtacacaatgagaatagtggaagggcaatgtgaaaagtgaggaatacacacacagtaaa |
148 |
Q |
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| T |
40083140 |
tttttgcaaaagtaaactccaatgtggcaatgcaaataagagtaca------gaatagtggaagggcaatgtgaaaagtgaggaatacacacacagtaaa |
40083047 |
T |
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| Q |
149 |
gagaatgtgggaaacaaaaggggaatccgtactct-----gtacgaccattatagctcatactatagtttcttcctatttgtgctgtgtctgtg |
237 |
Q |
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| T |
40083046 |
gagaatgtgggaaacaaaaggggaatccgtactctgtacagtacgaccattatagttcatactatagtttcttcctatttgtgctgtgtttgtg |
40082953 |
T |
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