View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16100_low_12 (Length: 215)
Name: NF16100_low_12
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16100_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 19804985 - 19805169
Alignment:
| Q |
15 |
caaaggcaaataaataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaattta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19804985 |
caaaggcaaataaataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaattta |
19805084 |
T |
|
| Q |
115 |
tttcttcacaaagtggttcgaaaatctcatacaattttgcaggaacgattattgtttgaatcggaattgaattacagtcagaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
19805085 |
tttcttcacaaagtggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaat |
19805169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 27775459 - 27775643
Alignment:
| Q |
15 |
caaaggcaaataaataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaattta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27775459 |
caaaggcaaataaataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccgaattgcacgaaaatgtaaagatgaatctgaaattta |
27775558 |
T |
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| Q |
115 |
tttcttcacaaagtggttcgaaaatctcatacaattttgcaggaacgattattgtttgaatcggaattgaattacagtcagaaat |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
27775559 |
tttcttcacaaagtggttcgaaaatctcatacaattctgcaggaacgatttttgtttgaatcggaattgaattacagtgagaaat |
27775643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 189
Target Start/End: Complemental strand, 40578075 - 40577901
Alignment:
| Q |
15 |
caaaggcaaataaataaataagaacagggatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaattta |
114 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40578075 |
caaaagcaaataaataaataagaacagagatgcagaaattgcaaacagaaactttcagggaccaaattgcacgaaaatgtaaagatgaatctgaaattta |
40577976 |
T |
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| Q |
115 |
tttcttcacaaagtggttcgaaaatctcatacaattttgcaggaacgattattgtttgaatcggaattgaattac |
189 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40577975 |
tttcttcacaaagtggttcgaaaatctcatacaattctgcaggaacgattattgtttgaatcggaattgaattac |
40577901 |
T |
|
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