View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16100_low_2 (Length: 497)
Name: NF16100_low_2
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16100_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 24 - 481
Target Start/End: Original strand, 55060815 - 55061273
Alignment:
| Q |
24 |
aaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcg |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55060815 |
aaacctctctttcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcg |
55060914 |
T |
|
| Q |
124 |
aaaaccaaaaggatctctgacaacaacaagtttatctttagtaacaaacacaattgaataagcacctttaactttttcacacgcttcaacaattatcgct |
223 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
55060915 |
aaaaccaaaaggatctctgacaacaaaaagtttatcttcagtaacaaacacaattgaataagcacctttaactttttcacacgcttcaacaattctcgct |
55061014 |
T |
|
| Q |
224 |
ataaaa-ggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatcagaagtagtgttgaaaattgaaccagattcttcaagttcatttctc |
322 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55061015 |
ataaaaaggtctatgatttgaagttgcaataagatgaagcaaaacttcagtatcagaagtagtgttgaaaattgaaccagattcttcaagttcatttctc |
55061114 |
T |
|
| Q |
323 |
aaggaacggtaattgacgaagttaccattatgagcaacaccaacggaaccaaaacggtaacctgcaacaaaaggttgatcgtttttgagcatggattggc |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
55061115 |
aaggaacggtaattgacgaagttaccattatgagcaacaccaacggaaccaaaacggtaacctgcaacaaaaggttgaacgtttttgagcatggattggc |
55061214 |
T |
|
| Q |
423 |
ctgcagttgaataacgaacgtgaccaacggctaagtttccagataattgacgaagtttt |
481 |
Q |
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| T |
55061215 |
ctgcagttgaataacggatgtgaccaatggctaagtttccaggtaattgacggagtttt |
55061273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 35 - 462
Target Start/End: Original strand, 27357010 - 27357437
Alignment:
| Q |
35 |
tcataagtagcttcaatcaaatcaagtgcacatgtttccgaagcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaag |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || || |||||||||||||||| || ||||||||| || |||||||||| ||| | ||| ||||| | |
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| T |
27357010 |
tcataagtagcttcaatcaaatcaagagcacaagtctcagaagcaaaaacaacagcaccattacttctcctccccataaccaaaggcctaaacccaaatg |
27357109 |
T |
|
| Q |
135 |
gatctctgacaacaacaagtttatctttagtaacaaacacaattgaataagcacctttaactttttcacacgcttcaacaattatcgctataaaaggtct |
234 |
Q |
| |
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|||| || ||| ||||||| ||||| | ||||||||||||||| ||||||||||||| || || ||||| || ||||||||| | ||||||||||| |
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| T |
27357110 |
gatccctcacagcaacaagcttatcctcagtaacaaacacaatcgaataagcaccttcaagcttctcacatgcatcaacaattcttaaaataaaaggtct |
27357209 |
T |
|
| Q |
235 |
atgatttgaagttgcaataagatgaagcaaaacttcagtatcagaagtagtgttgaaaattgaaccagattcttcaagttcatttctcaaggaacggtaa |
334 |
Q |
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||| |||||||| ||||| | |||||| | |||||||||||||||||||||||| ||||| ||||| ||||||||| | | ||| || | ||| ||| |
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| T |
27357210 |
atgctttgaagtagcaatcaaatgaagaacaacttcagtatcagaagtagtgttaaaaatcgaacctttttcttcaagcttagctcttaaagtacgataa |
27357309 |
T |
|
| Q |
335 |
ttgacgaagttaccattatgagcaacaccaacggaaccaaaacggtaacctgcaacaaaaggttgatcgtttttgagcatggattggcctgcagttgaat |
434 |
Q |
| |
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|| || || ||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||| | || || | |||||| || || ||||| |||| |
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| T |
27357310 |
ttaactaaattaccgttatgagcaacaccaacagaaccaaaacggtacccagcaacaaaaggttgaacattcttcaacatggactgtccagcagtagaat |
27357409 |
T |
|
| Q |
435 |
aacgaacgtgaccaacggctaagtttcc |
462 |
Q |
| |
|
||||||| || || | ||||||| |||| |
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|
| T |
27357410 |
aacgaacatggccgatggctaagcttcc |
27357437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 173
Target Start/End: Original strand, 44334066 - 44334166
Alignment:
| Q |
77 |
gcaaaaacaacagaactattacttcttcttcccataaccagaggtcgaaaaccaaaaggat-ctctgacaacaacaa---gtttatctttagtaacaaac |
172 |
Q |
| |
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|||||||| ||||||| ||||| || |||| |||||||| ||||||||||| |||||||| |||||| | |||||| ||||||||| |||||||||| |
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| T |
44334066 |
gcaaaaactacagaaccgttactactacttcacataaccaaaggtcgaaaacaaaaaggatcctctgatagcaacaagttgtttatcttcagtaacaaac |
44334165 |
T |
|
| Q |
173 |
a |
173 |
Q |
| |
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| |
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|
| T |
44334166 |
a |
44334166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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