View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16100_low_6 (Length: 328)
Name: NF16100_low_6
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16100_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 6634287 - 6634056
Alignment:
| Q |
13 |
aagaatatgagacagaaaccaaagacgtaaacaataatgttgacaatacaagttcagctgctgaggaacaaaaggaaagtgaaagtgtcaaagaggcagg |
112 |
Q |
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| T |
6634287 |
aagaaaatgagacagaaaccaaagacataaacaataatgttgacaatacaagttcagctgctgaggaacaaaaggaaattgaaagtgtcaaagaggcagg |
6634188 |
T |
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| Q |
113 |
tgttgaagaaaataaggacgatgcagctaaggatgttaaagacagtgaagctatggagaaaataaatgatgaaggaaagaaagaggaggatgttgtggag |
212 |
Q |
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| T |
6634187 |
tgttgaagaaaataaggacgatgcagctaaggatgttaaagacggtgaagctatggagaaaataaatgatgaaggaaagaaagaggaggatgttgtggag |
6634088 |
T |
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| Q |
213 |
gaaccttctaaagaaattgagaaaaatgatga |
244 |
Q |
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| T |
6634087 |
gaaccttctgctgaagttgagaaaaaagatga |
6634056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 236 - 309
Target Start/End: Complemental strand, 6634124 - 6634051
Alignment:
| Q |
236 |
aaatgatgaagaaaagaaggagaatgatgttgtggaggaaccttctgctgaagttgagaaaaaagatgaacatg |
309 |
Q |
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||||||||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
6634124 |
aaatgatgaaggaaagaaagaggaggatgttgtggaggaaccttctgctgaagttgagaaaaaagatgaccatg |
6634051 |
T |
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