View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16100_low_7 (Length: 298)

Name: NF16100_low_7
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16100_low_7
NF16100_low_7
[»] chr5 (3 HSPs)
chr5 (19-273)||(626007-626261)
chr5 (150-238)||(16465236-16465324)
chr5 (146-223)||(16472351-16472428)
[»] scaffold0007 (1 HSPs)
scaffold0007 (133-271)||(190226-190363)
[»] chr3 (2 HSPs)
chr3 (135-253)||(25052515-25052634)
chr3 (184-258)||(7858277-7858352)
[»] chr1 (1 HSPs)
chr1 (133-258)||(10253811-10253937)
[»] chr7 (1 HSPs)
chr7 (177-273)||(37205246-37205343)
[»] chr4 (1 HSPs)
chr4 (133-235)||(12266497-12266599)
[»] chr2 (2 HSPs)
chr2 (184-259)||(12261287-12261363)
chr2 (133-201)||(12261484-12261552)


Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 626261 - 626007
Alignment:
Q  19 caaaatgcaacatttttgaaattttatggtgtgagtaaacaacgtagatgcctatagagcaactctagcttccaaaaccagcaccaaagtccaaaaccga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  626261 caaaatgcaacatttttgaaattttatggtgtgagtaaacaacgtagatgcctatagagcaactttagcttccaaaaccagctccaaagtccaaaaccga 626162  T
Q  119 accgatgttgttaataataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  626161 accgatgttgttaataataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatg 626062  T
Q  219 aataaagtgttttatctaggttgagtttgatgatggtggtcgggatgttcgtgaa 273  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  626061 aataaagtgttttatctaggttgagtttgatgatgatggtcgggatgttcgtgaa 626007  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 238
Target Start/End: Original strand, 16465236 - 16465324
Alignment:
Q  150 gtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatctagg 238  Q
    |||||||| |||| || ||||||| || |||| ||||| ||||| |||||| |||||| || |||||||||||| ||||||||||||||    
T  16465236 gtggtggtagagggaatgttgaattagatggaagttaagataatccaagttaggttacagtcaatgatgaataaggtgttttatctagg 16465324  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 16472351 - 16472428
Alignment:
Q  146 caaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatgaataa 223  Q
    |||||||||||| |||| || ||||||| ||||||| ||||||||||| ||| || | ||| |||||||| |||||||    
T  16472351 caaagtggtggtagaggcaatgttgaattaggtggaagttaaaataatccaaattagattatggttaatggtgaataa 16472428  T

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Target: scaffold0007 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 133 - 271
Target Start/End: Complemental strand, 190363 - 190226
Alignment:
Q  133 taataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgtttta 232  Q
    ||||||| ||||||||||||||||| |||| || ||||||| | |||||| ||||||||||||||||| | ||||||||||||||||||||  |||||||    
T  190363 taataatgatatgcaaagtggtggtagaggcaatgttgaattatgtggagtttaaaataattcaagttagattacggttaatgatgaataagatgtttta 190264  T
Q  233 tctaggttgagtttgatgatggtggtcgggatgttcgtg 271  Q
    ||| ||  |||||| |||||| ||||| |||||||||||    
T  190263 tct-gggagagtttaatgatgatggtcaggatgttcgtg 190226  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 135 - 253
Target Start/End: Complemental strand, 25052634 - 25052515
Alignment:
Q  135 ataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatc 234  Q
    ||||| || |||||||||| |||||||| || |  |||| ||||||||| |||||||||||||||| ||||||||||||||||||||||  ||||||||     
T  25052634 ataatgatgtgcaaagtggcggtggaggcaatgacgaattaggtggaggctaaaataattcaagttaggttacggttaatgatgaataagatgttttatt 25052535  T
Q  235 t-aggttgagtttgatgatg 253  Q
    |  |||||||||||||||||    
T  25052534 tggggttgagtttgatgatg 25052515  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 7858277 - 7858352
Alignment:
Q  184 ttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatcta-ggttgagtttgatgatggtggt 258  Q
    |||||||||| ||| || ||||||  |||| |||||||||  ||||||||||| ||||||||||||||||| ||||    
T  7858277 ttaaaataatccaatttaggttacaattaaggatgaataagatgttttatctagggttgagtttgatgatgctggt 7858352  T

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Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 10253937 - 10253811
Alignment:
Q  133 taataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgtttta 232  Q
    ||||||| || |||||||||||| |||| | || ||||||| ||||| | ||||||||||| |||||| |||||||||||||||| ||||| ||| ||||    
T  10253937 taataatgatgtgcaaagtggtgttggaagcaatgttgaattaggtgaatgttaaaataatccaagttaggttacggttaatgatcaataaggtgattta 10253838  T
Q  233 tct-aggttgagtttgatgatggtggt 258  Q
    | |  ||| ||||||||||||| ||||    
T  10253837 tttggggtagagtttgatgatgatggt 10253811  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 177 - 273
Target Start/End: Original strand, 37205246 - 37205343
Alignment:
Q  177 gtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatct-aggttgagtttgatgatggtggtcgggatgttcgtgaa 273  Q
    ||||||||| ||||||| |||||  |||||||||||||||||||||| ||||||||| |  |||||||||||||| || |||||  |||||| |||||    
T  37205246 gtggaggtttaaataatccaagtcaggttacggttaatgatgaataaggtgttttatgtgcggttgagtttgatggtgatggtcaagatgtttgtgaa 37205343  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 235
Target Start/End: Complemental strand, 12266599 - 12266497
Alignment:
Q  133 taataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagtttggttacggttaatgatgaataaagtgtttta 232  Q
    ||||||| || |||| ||||||| | || | || ||||||| || |||||||||||  ||| |||||| |||||||||||||| |||||||  |||||||    
T  12266599 taataatgatgtgcatagtggtgatagaagcaatgttgaattagttggaggttaaatcaatccaagttaggttacggttaatggtgaataagatgtttta 12266500  T
Q  233 tct 235  Q
    |||    
T  12266499 tct 12266497  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 12261363 - 12261287
Alignment:
Q  184 ttaaaataattcaagtttggttacggttaatgatgaataaagtgttttatctag-gttgagtttgatgatggtggtc 259  Q
    ||||||||||  ||||| |||||| ||||| ||||||||| ||||||||| | | |||||||||||||||| |||||    
T  12261363 ttaaaataatcaaagttaggttacagttaaggatgaataaggtgttttatttggtgttgagtttgatgatgatggtc 12261287  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 201
Target Start/End: Complemental strand, 12261552 - 12261484
Alignment:
Q  133 taataataatatgcaaagtggtggtggaggaaacgttgaataaggtggaggttaaaataattcaagttt 201  Q
    |||||| ||| |||||||||||||| |||| || | ||||  ||||||||||||| ||||| |||||||    
T  12261552 taataacaatgtgcaaagtggtggtagaggcaatggtgaactaggtggaggttaacataatccaagttt 12261484  T

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