View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16100_low_9 (Length: 249)

Name: NF16100_low_9
Description: NF16100
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16100_low_9
NF16100_low_9
[»] chr4 (6 HSPs)
chr4 (18-149)||(36630877-36631008)
chr4 (166-227)||(36635450-36635511)
chr4 (152-226)||(18084612-18084686)
chr4 (152-226)||(36664323-36664397)
chr4 (108-157)||(36635130-36635179)
chr4 (194-226)||(36630847-36630879)
[»] chr1 (1 HSPs)
chr1 (152-226)||(42601455-42601529)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 36631008 - 36630877
Alignment:
Q  18 aatactggtgtgtgttcgtccgcgagtgtcaaagcgtttgcgcctagcattcctcttaaaaaacagtaactgctattccttattttataagaggcctaac 117  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36631008 aatactggcgtgtgttcgtccgcgagtgtcaaagcatttgcacctagcattcctcttaaaaaacagtaactgctattccttattttataagaggcctaac 36630909  T
Q  118 aggttcctacaataatctaatatgctatattt 149  Q
    ||||||||||||||||||||||||||||||||    
T  36630908 aggttcctacaataatctaatatgctatattt 36630877  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 36635450 - 36635511
Alignment:
Q  166 atcaaaatgcatacgaggaacgttaccttttcagcgcgacagagatgaagactgggaggtgt 227  Q
    ||||||||||||  || ||| |||||||||||||||| ||||||||||||||||||||||||    
T  36635450 atcaaaatgcatgtgacgaatgttaccttttcagcgcaacagagatgaagactgggaggtgt 36635511  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 226
Target Start/End: Complemental strand, 18084686 - 18084612
Alignment:
Q  152 ctcaaagaggatacatcaaaatgcatacgaggaacgttaccttttcagcgcgacagagatgaagactgggaggtg 226  Q
    |||||||||||| ||| |||||| ||  |||||  |||||||||||| |||| |||||||||||| |||||||||    
T  18084686 ctcaaagaggattcataaaaatgaatgtgaggagtgttaccttttcatcgcggcagagatgaagattgggaggtg 18084612  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 36664323 - 36664397
Alignment:
Q  152 ctcaaagaggatacatcaaaatgcatacgaggaacgttaccttttcagcgcgacagagatgaagactgggaggtg 226  Q
    |||||||||||| ||| |||||| ||  |||||  |||||||||||| |||| |||||||||||| |||||||||    
T  36664323 ctcaaagaggattcataaaaatgaatgtgaggagtgttaccttttcatcgcggcagagatgaagattgggaggtg 36664397  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 157
Target Start/End: Original strand, 36635130 - 36635179
Alignment:
Q  108 gaggcctaacaggttcctacaataatctaatatgctatatttttctcaaa 157  Q
    |||||| ||||||||||||||||||||||||| |||||||  ||||||||    
T  36635130 gaggccaaacaggttcctacaataatctaataggctatatcattctcaaa 36635179  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 36630879 - 36630847
Alignment:
Q  194 tttcagcgcgacagagatgaagactgggaggtg 226  Q
    |||||||||||||||||||||||||||||||||    
T  36630879 tttcagcgcgacagagatgaagactgggaggtg 36630847  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 42601455 - 42601529
Alignment:
Q  152 ctcaaagaggatacatcaaaatgcatacgaggaacgttaccttttcagcgcgacagagatgaagactgggaggtg 226  Q
    ||||||| |||| |||||||||||||  |||||| |||||||||||||||| ||||||||||||| || ||||||    
T  42601455 ctcaaaggggatccatcaaaatgcatgtgaggaatgttaccttttcagcgcaacagagatgaagattgagaggtg 42601529  T

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