View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16101_high_1 (Length: 412)
Name: NF16101_high_1
Description: NF16101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16101_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 7 - 410
Target Start/End: Complemental strand, 9059454 - 9059029
Alignment:
| Q |
7 |
gagaagcatagggaaaaatccattgagaattactagaattccttcaggagggccaagggaatttcacaatcttgttcaagaaactgagaaagggtcatca |
106 |
Q |
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| T |
9059454 |
gagaatcatagggaaaaatccattgagaattactagaattccttcaggagggccaagggaatttcacaatcttgttcaagaagctgagaaagggtcatca |
9059355 |
T |
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| Q |
107 |
acaattttaactttgaagaagaaaaatggtgttggaaataagctgtttagtcacaaaagagcttaccataggaatcggtttaatgattggtgtgttgatg |
206 |
Q |
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| T |
9059354 |
acaattttaactttgaagaagaaaaatggtgttggaaataagctgtttagtcacaaaagagcttatcataggaatcggtttaatgattggtgtgttgatg |
9059255 |
T |
|
| Q |
207 |
tgttttattttgagagttttggtaagagtgaggaccaaccctctgaaaataactcattagggtaactatatatgtgtagatcatagtatagtttgttaac |
306 |
Q |
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| T |
9059254 |
tgttttattttgagagttttggtaagagtgaggaccaaccctctgaaaataactcattagggtaactatatatgtgtagatcatagtatagtttgttaac |
9059155 |
T |
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| Q |
307 |
ttttatttgaaat----------------------tatgcttgtaaagcttttgcatttcaactaatcatgtagttagtaaatgttgaaaatcataaagt |
384 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | |
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| T |
9059154 |
ttttatttgaaattatataaataatgctactaaattatgcttgtaaagcttttgcattttaactaatcatgtagttagtaaatgttgaaaatcatagatt |
9059055 |
T |
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| Q |
385 |
atgtataaactaattgaatttcacct |
410 |
Q |
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| T |
9059054 |
atgtataaactaattggatttcacct |
9059029 |
T |
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