View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16101_low_3 (Length: 330)
Name: NF16101_low_3
Description: NF16101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16101_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 88 - 320
Target Start/End: Complemental strand, 44311405 - 44311173
Alignment:
| Q |
88 |
atcattgttgtcaagaatctctatgattctaaatttaacatttttagaaaaattcatagcatgtgggttcaattttatgaaaaattgttgaattcgtttt |
187 |
Q |
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| T |
44311405 |
atcattgttgtcaagaatctctatgattctaaatttaacatttttagaaaaattcatagcatgtgggttcaattttatgaaaaattgttgaattcgtttt |
44311306 |
T |
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| Q |
188 |
ccattttttatctaaaactaaaactgatgagcgaataataggaacaaaattaagaaaggagagaagttgaaattgagatttacatcacaaaatgttaatt |
287 |
Q |
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| T |
44311305 |
ccattttttatctaaaactaaaactgatgagcgaataatagaaacaaaattaagaaaggagagaagttgaaattgagatttacatcacaatatgttaatt |
44311206 |
T |
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| Q |
288 |
gaatgacaatttcctcaaaccagatgcatctat |
320 |
Q |
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| T |
44311205 |
gaatgacaacttcctcaaaccagatgcatctat |
44311173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 85
Target Start/End: Complemental strand, 44311728 - 44311654
Alignment:
| Q |
11 |
attattcttgggaatgttagttcatttcttcttttcttacaaatgcagacacaaagaataataatactacgtgaa |
85 |
Q |
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| T |
44311728 |
attattcttgggaatgttagttcatttcttcttttcttaaaaatgcagacacaacgaataataatactatgtgaa |
44311654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 18701528 - 18701454
Alignment:
| Q |
13 |
tattcttgggaatgttagttcatttc---ttcttttcttacaaatgcagacacaaagaataataatactacgtgaa |
85 |
Q |
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| T |
18701528 |
tattcttgagaatgtt-gttcatttcctgttcttttcttacaattgtagacacaacgaatagtaatactatgtgaa |
18701454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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