View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16101_low_4 (Length: 269)
Name: NF16101_low_4
Description: NF16101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16101_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 29 - 255
Target Start/End: Complemental strand, 35385853 - 35385630
Alignment:
| Q |
29 |
tcaagcttttagttcatgaagtctcattttgtttgtgctgatttgtctcaggaatgttcaataacaactaaccattaattaatatggccatttcaaaaat |
128 |
Q |
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| T |
35385853 |
tcaagcttttagttcatgaagtctcattttgtttgtgctgatttgtctcaggaatgttcactaacaactaaccattaattaatatggccatttcaaaaat |
35385754 |
T |
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| Q |
129 |
ataatgttgagtatgtgttgttataatgatgttagggataatatggtctc-aatgagataaatctcactcttaattttttaaccattcgtacttttttct |
227 |
Q |
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| T |
35385753 |
ataatgttgagtatgtgttgttataatgttgttagggataata-ggtctcaaatgagataaatctcactcttaattttttaaccattcgtactttt---t |
35385658 |
T |
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| Q |
228 |
tctttccttcgtccattaaagatcttgc |
255 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
35385657 |
tctttccttcgtccattaaagatcttgc |
35385630 |
T |
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