View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16101_low_5 (Length: 236)
Name: NF16101_low_5
Description: NF16101
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16101_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 30284727 - 30284892
Alignment:
| Q |
58 |
ctacacacatcatcaaagacattttaatattttggtgctattaaggatattaaatactttttctaagttaatactccacgttactcttgaattattataa |
157 |
Q |
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| T |
30284727 |
ctacacacatcatcaaagacattttaatattttggtgctattaaggatattaaatactttttctaagttaatactccacgttactcttgaattattataa |
30284826 |
T |
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| Q |
158 |
cttctcagatgtttcattagatacacagatttagtaaatgtacaacattttcctcatagtataatc |
223 |
Q |
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| T |
30284827 |
cttctcagatgtttcattagatacaaagatttagtaaatgtacaacattttcctcatagtataatc |
30284892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 86 - 222
Target Start/End: Original strand, 30278086 - 30278236
Alignment:
| Q |
86 |
attttggtgctattaaggatattaaatactttttctaagttaatactccacgttactcttgaattattataacttctca-------------gatgtttc |
172 |
Q |
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| T |
30278086 |
attttggggctattaaggatgttaaatactctttctaaggtaatactccactttactcttaaattattagaacttctcatatctttcatgatggtgtttc |
30278185 |
T |
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| Q |
173 |
attagatacacagatttagtaaatgt-acaacattttcctcatagtataat |
222 |
Q |
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| T |
30278186 |
attagatacgcagatttagtaaatgtaacagcattttcctcgtagtataat |
30278236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 30284059 - 30284101
Alignment:
| Q |
21 |
gaagttacatatctagtcatgcttctggtttcacactctacac |
63 |
Q |
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| T |
30284059 |
gaagttacatatctagtcatgcttctggtttcacactctacac |
30284101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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