View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16102_low_1 (Length: 888)

Name: NF16102_low_1
Description: NF16102
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16102_low_1
NF16102_low_1
[»] chr6 (28 HSPs)
chr6 (358-875)||(31564316-31564843)
chr6 (13-299)||(31564838-31565117)
chr6 (1-210)||(33414579-33414788)
chr6 (213-579)||(33385314-33385670)
chr6 (213-579)||(33259583-33259959)
chr6 (10-210)||(33258215-33258416)
chr6 (616-780)||(33416366-33416536)
chr6 (213-405)||(33416152-33416345)
chr6 (1-185)||(33269552-33269740)
chr6 (40-212)||(33278972-33279139)
chr6 (213-398)||(24631975-24632161)
chr6 (12-210)||(33395074-33395274)
chr6 (106-210)||(33293090-33293194)
chr6 (1-117)||(33384040-33384156)
chr6 (257-439)||(9165228-9165418)
chr6 (737-866)||(33385707-33385837)
chr6 (43-167)||(33280358-33280482)
chr6 (450-556)||(24631864-24631970)
chr6 (368-442)||(29274300-29274376)
chr6 (792-851)||(33281320-33281376)
chr6 (3-47)||(33293034-33293078)
chr6 (164-210)||(28873045-28873091)
chr6 (809-863)||(33416538-33416592)
chr6 (792-851)||(33301947-33302003)
chr6 (473-548)||(281808-281881)
chr6 (258-299)||(33282241-33282282)
chr6 (258-299)||(33398042-33398083)
chr6 (258-299)||(33408952-33408993)
[»] chr2 (7 HSPs)
chr2 (2-210)||(17447760-17447969)
chr2 (734-863)||(17443374-17443503)
chr2 (514-579)||(17443537-17443602)
chr2 (361-442)||(34339039-34339122)
chr2 (369-409)||(3102617-3102657)
chr2 (474-551)||(14299588-14299663)
chr2 (381-442)||(7103554-7103615)
[»] scaffold0428 (7 HSPs)
scaffold0428 (10-210)||(2336-2537)
scaffold0428 (343-579)||(3802-4047)
scaffold0428 (40-212)||(15114-15281)
scaffold0428 (43-167)||(13771-13895)
scaffold0428 (213-299)||(3704-3791)
scaffold0428 (792-851)||(12876-12932)
scaffold0428 (258-299)||(11970-12011)
[»] chr5 (7 HSPs)
chr5 (617-771)||(30653203-30653360)
chr5 (368-490)||(11684346-11684468)
chr5 (444-509)||(30653373-30653438)
chr5 (361-442)||(32059660-32059742)
chr5 (361-405)||(10391269-10391313)
chr5 (498-549)||(11457158-11457209)
chr5 (361-400)||(29115328-29115367)
[»] chr8 (8 HSPs)
chr8 (473-551)||(13000381-13000457)
chr8 (366-434)||(26717178-26717246)
chr8 (370-456)||(5290566-5290649)
chr8 (361-424)||(26716527-26716590)
chr8 (473-551)||(30191098-30191174)
chr8 (408-494)||(10079082-10079168)
chr8 (445-494)||(30389108-30389157)
chr8 (368-442)||(34788498-34788574)
[»] chr3 (6 HSPs)
chr3 (473-549)||(43115093-43115167)
chr3 (361-439)||(38462197-38462277)
chr3 (368-441)||(22232749-22232824)
chr3 (352-434)||(3015928-3016011)
chr3 (473-551)||(37273171-37273247)
chr3 (476-572)||(24624250-24624344)
[»] chr7 (4 HSPs)
chr7 (436-549)||(3468614-3468725)
chr7 (361-442)||(3610811-3610894)
chr7 (369-490)||(26935573-26935696)
chr7 (327-405)||(22388014-22388093)
[»] chr1 (2 HSPs)
chr1 (371-424)||(44207697-44207750)
chr1 (500-551)||(15581316-15581367)
[»] scaffold0024 (1 HSPs)
scaffold0024 (383-456)||(21335-21410)
[»] chr4 (3 HSPs)
chr4 (370-424)||(32920489-32920543)
chr4 (367-434)||(47970240-47970309)
chr4 (384-454)||(55437345-55437415)


Alignment Details
Target: chr6 (Bit Score: 444; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 358 - 875
Target Start/End: Complemental strand, 31564843 - 31564316
Alignment:
Q  358 aagataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagctt 457  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  31564843 aagataaacacttatcataaaattgcatatgtataagctatttttataacaagataaaatgaagtcacactgttttcctacaagtgattttcataagctt 31564744  T
Q  458 ttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 557  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31564743 ttctagacaacatatggaaataagctgaaaacaacttttgtggacatgtcattagttgtttccattaactcttcgaaacagtctcacaagtgctaatatg 31564644  T
Q  558 actgtataagttcaaatacatcaatccacaagaggcaaaacaatatgagaagatgggcaaaatggaagtataattcattttttctctttt------acat 651  Q
    | |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||      ||||    
T  31564643 agtgtataagttcaaatatatcaatccacaagaggcaaaacaatatgaaaagatgggcaaaatggaagtataattaattttttctcttttacatttacat 31564544  T
Q  652 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaac----agcaaataagatga 747  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  31564543 gtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtagaaaaattagaatagaaacattaagcaaataagatga 31564444  T
Q  748 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 847  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31564443 aattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttc 31564344  T
Q  848 ttcatcttcaacttgtactaccacaggt 875  Q
    ||||||||||||||||||||||||||||    
T  31564343 ttcatcttcaacttgtactaccacaggt 31564316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 13 - 299
Target Start/End: Complemental strand, 31565117 - 31564838
Alignment:
Q  13 tgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgt 112  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  31565117 tgcattgcaagatcatgaaccaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgcgtgaatcgt 31565018  T
Q  113 gaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 212  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565017 gaatgtatgtaccgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 31564918  T
Q  213 caagtgttggtgatatagttgctgcaattcaaaggggacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 299  Q
     ||||||||||       |||||||||| ||||||||   ||||||||||||||||| || ||| |||||||||||||| |||||||    
T  31564917 taagtgttggt-------ttgctgcaatccaaagggggtggaatagacatttaaaaaatagaaatcttatgtaagaatttaaagata 31564838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 33414579 - 33414788
Alignment:
Q  1 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 100  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| || | ||||||||||||||| ||||||||||||||||||| ||    
T  33414579 caagcagcaacttgcattgcaagatcatcaaccaactccttgaatttctcacttctgccaacaaagtccgtttcacagttcacttcaattagaacaccaa 33414678  T
Q  101 tgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttg 200  Q
    |  ||| |||||||||||||||| ||||||||||||||||  || |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  33414679 tacgtgcatcgtgaatgtatgtaccgattcttccttcagctgctagtcttccggatttcttatcagcggatgagagaccctttttcctgagatatgcttg 33414778  T
Q  201 cgccttttca 210  Q
    ||||||||||    
T  33414779 cgccttttca 33414788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 213 - 579
Target Start/End: Original strand, 33385314 - 33385670
Alignment:
Q  213 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 311  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| ||||||||||  |||| ||| ||||||||||||||||||||||||||||||||||    
T  33385314 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacgattagaaatcttatgtaagaattcaaagataggtgaacaggct 33385413  T
Q  312 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-- 409  Q
     |||| ||||||           |||| | |||||| ||| |||| ||||||| |||||  |||| || |||| |||||||||| ||||||||| |||      
T  33385414 ggaaacctaaga-----------taaacagcctaatgaaaacttataagataagcactttacatataagtgctgatgtataagcaatttttataacaaaa 33385502  T
Q  410 gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 509  Q
    |||||||||||||||||||  | | |||||||| |||||||||||||||||||||||   || ||||| |||||||||||||||||| ||||||||||||    
T  33385503 gataaaatgaagtcatact--tatgctataagctattttcataagcttttctagacagtttatggaaaaaagctgaaaacaacttttatggacatgtcat 33385600  T
Q  510 tggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 579  Q
      | ||||||||| |||||||| ||||||| ||||||||||| |||| | |  |||||||||||| ||||    
T  33385601 gagctgtttccataaactcttccaaacagtttcacaagtgcttatatcagtagataagttcaaatgcatc 33385670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 213 - 579
Target Start/End: Original strand, 33259583 - 33259959
Alignment:
Q  213 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 311  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| |||||||||||||||||||||| || |  |||||    
T  33259583 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagatatgtaagaaggct 33259682  T
Q  312 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagc--aa 409  Q
     |||| ||||||| | ||||||||||| | ||||||| ||||||| |||||||   |||  |||| || ||||||||||||||||||||||||| |  ||    
T  33259683 ggaaacctaagaccttgtttggataaacagcctaattcaagcttataagataagagctttacatataagtgcttatgtataagctatttttataacaaaa 33259782  T
Q  410 gataaaatgaagtcatactgttttc-------ctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggac 502  Q
    |||||| ||||||||||||||||||       |||||||| ||||||||||||||||||| |||  ||| | |||   |||||||||| ||||| |||||    
T  33259783 gataaattgaagtcatactgttttcctatatgctataagctattttcataagcttttctatacagtatatgtaaaatggctgaaaacagcttttatggac 33259882  T
Q  503 atgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 579  Q
    |||||||| |  |||||||| |||||||| ||||||| |  |||||||| |||| | | ||||||||||||||||||    
T  33259883 atgtcattagccgtttccataaactcttccaaacagtttggcaagtgcttatatcaatatataagttcaaatacatc 33259959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 33258215 - 33258416
Alignment:
Q  10 acttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaat 109  Q
    ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||||||||||    
T  33258215 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 33258314  T
Q  110 cgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcctttt 208  Q
    || || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||    
T  33258315 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 33258414  T
Q  209 ca 210  Q
    ||    
T  33258415 ca 33258416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 616 - 780
Target Start/End: Original strand, 33416366 - 33416536
Alignment:
Q  616 aaaatggaagtataat--tcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgt 713  Q
    |||||||||||||| |  || ||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||| |    
T  33416366 aaaatggaagtatattcatcttttcttctcttttacatgtaaaaactgaaatacatgtataaattcaaatctgtccaacatatttacttctatttgatat 33416465  T
Q  714 agaaaaattagaatagaaa----cagcaaataagatgaaattgaaaccattactcgagcctttgtctgaag 780  Q
    |||||||| ||||| ||||     ||||||||||||||||| |||||| |||||||||||||  |||||||    
T  33416466 agaaaaatgagaattgaaatatgaagcaaataagatgaaatggaaacctttactcgagccttcatctgaag 33416536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 213 - 405
Target Start/End: Original strand, 33416152 - 33416345
Alignment:
Q  213 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 311  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| ||||| ||  ||||  ||| ||||||||||||||||||||| ||    
T  33416152 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaattagaagtcttaactaaaaattcaaagataggtgaacagact 33416251  T
Q  312 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 405  Q
    ||||||| | ||| | ||||||||||| ||||||||||||||||| ||||||| | || || || ||| |||||||||||||||||||||||||    
T  33416252 agaaaaccatgaccttgtttggataaacaacctaattaaagcttataagataagcgctcattatcaaagtgcttatgtataagctatttttata 33416345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 33269552 - 33269740
Alignment:
Q  1 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 100  Q
    |||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| || | |||||| |||||||| |||||||||||||||||||  |    
T  33269552 caagcagcaacttgcattgcaagatcatcaaccaacttcttgaatttctcacttctgccaacaaagtcggtttcacagttcacttcaattagaacaccga 33269651  T
Q  101 tgtgtgaatcgtgaatg----tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttt 185  Q
    ||  || || |||||||    |||||| |||||||| |||||||  || ||||| | || ||||| |||||||||||||||||||||||    
T  33269652 tgcatgcattgtgaatgtatatatgtaccgattctttcttcagctgctagtcttgcagacttcttatcagcggatgagagacccttttt 33269740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 40 - 212
Target Start/End: Original strand, 33278972 - 33279139
Alignment:
Q  40 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 139  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  33278972 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 33279071  T
Q  140 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 212  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  33279072 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 33279139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 213 - 398
Target Start/End: Complemental strand, 24632161 - 24631975
Alignment:
Q  213 caagtgttggtgatatagttgctgcaattcaaagggga-cagaatagacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggct 311  Q
    |||||| |||||||| |||||||||||| ||||  ||| ||||| |||||||||| ||||| ||| |||||||| |||||||||||| |||||||| | |    
T  24632161 caagtgctggtgataaagttgctgcaatccaaacaggagcagaacagacatttaacaattagaaatcttatgtaggaattcaaagattggtgaacaagtt 24632062  T
Q  312 agaaaactaagacttagtttggataaataacctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctat 398  Q
     |||||||||||| | ||||||||||  ||| ||||||||  ||| ||||||||| ||||||||| || |||||||| |||||||||    
T  24632061 ggaaaactaagacctcgtttggataagcaacttaattaaatattataagataaacgcttatcatataagtgcttatgcataagctat 24631975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 33395074 - 33395274
Alignment:
Q  12 ttgcattgcaagatcatgaacaaactccttgaatttctcacttcta--ccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaat 109  Q
    |||||||| |||||||  ||| |||||||||||| | ||||||||   || | |||||| |||||||| ||||||||||| ||||||   ||| ||| ||    
T  33395074 ttgcattgaaagatcagcaaccaactccttgaatctatcacttctgtgccaacaaagtcggtttcacagttcacttcaatcagaacatagatgcgtgcat 33395173  T
Q  110 cgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttc 209  Q
    ||| ||||||| || ||||||||||||||||  || | || ||||||||||||||||| ||||||||||||||| |||| ||||||| ||| ||||||||    
T  33395174 cgtcaatgtatttaccgattcttccttcagctgctagcctaccggatttcttgtcagctgatgagagaccctttgttctaaggtatgattgggccttttc 33395273  T
Q  210 a 210  Q
    |    
T  33395274 a 33395274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 33293090 - 33293194
Alignment:
Q  106 gaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcct 205  Q
    |||||||||||||||||| | ||||||||||||||  || |||||| ||||||||| |||||| |||||||||||||||||||||||||||||| | |||    
T  33293090 gaatcgtgaatgtatgtaccaattcttccttcagctgctagtcttctggatttcttatcagcgaatgagagacccttttttctgaggtatgctttcacct 33293189  T
Q  206 tttca 210  Q
    |||||    
T  33293190 tttca 33293194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 33384040 - 33384156
Alignment:
Q  1 caagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaa 100  Q
    |||||||| ||||||||||||||||||| ||| |||||||| | |||||||||||| |||| |||||| |||| ||| |||||||||||||||||||  |    
T  33384040 caagcagccacttgcattgcaagatcatcaaccaactccttaattttctcacttctgccgacaaagtcggtttgacagttcacttcaattagaacaccga 33384139  T
Q  101 tgtgtgaatcgtgaatg 117  Q
    ||||||||| |||||||    
T  33384140 tgtgtgaatagtgaatg 33384156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 257 - 439
Target Start/End: Original strand, 9165228 - 9165418
Alignment:
Q  257 agacatttaaaaattacaaaccttatgtaagaattcaaagataggtgaacaggctagaaaactaagactta-------gtttggataaataacctaatta 349  Q
    |||||||||| ||||| ||| ||||||||| ||||||||||||||||||||||||  ||| ||| ||  ||       |||||||||||   ||||||||    
T  9165228 agacatttaacaattagaaatcttatgtaaaaattcaaagataggtgaacaggctgcaaacctatgagctatgaccttgtttggataaacgccctaatta 9165327  T
Q  350 aagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaaga--taaaatgaagtcatactgttttcctata 439  Q
    ||||||| |||||||   |||| |||| || | ||||||||||||||||||||||| ||| |  ||| ||||||||||||||||||||||||    
T  9165328 aagcttataagataagtgctta-catataagtacttatgtataagctatttttataacaaaaggtaagatgaagtcatactgttttcctata 9165418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 737 - 866
Target Start/End: Original strand, 33385707 - 33385837
Alignment:
Q  737 aaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttg-tctcggatgc 835  Q
    |||||||||||||||| |||| || ||| ||||||  ||||| |  ||||| ||||||||||||||||| ||||||| | ||||||||| | |   ||||    
T  33385707 aaataagatgaaattgcaacctttgctcaagccttcatctgacgctgtaattccggtttgtccattagagttagatacgctgttgtttgttttttaatgc 33385806  T
Q  836 aattgcaacttcttcatcttcaacttgtact 866  Q
    |||||||||||||||| ||||||||||||||    
T  33385807 aattgcaacttcttcaccttcaacttgtact 33385837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 33280358 - 33280482
Alignment:
Q  43 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 142  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  33280358 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 33280457  T
Q  143 ctcgtcttccggatttcttgtcagc 167  Q
     |  |||||||||||||||||||||    
T  33280458 ttaatcttccggatttcttgtcagc 33280482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 450 - 556
Target Start/End: Complemental strand, 24631970 - 24631864
Alignment:
Q  450 ataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 549  Q
    ||||||||||||| ||| | |  ||||||||||| |||||| ||||| ||||||| ||||  ||||||||||| |||||||| ||| ||| |||||||||    
T  24631970 ataagcttttctaaacagcttttggaaataagctaaaaacagcttttatggacatatcatgagttgtttccataaactcttccaaatagtttcacaagtg 24631871  T
Q  550 ctaatat 556  Q
    || ||||    
T  24631870 cttatat 24631864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 29274376 - 29274300
Alignment:
Q  368 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 442  Q
    ||||||||| || |||||||||||||||||||| ||||||  |||||||||| |||||| | ||||||| |||||||    
T  29274376 cttatcatagaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagc 29274300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 792 - 851
Target Start/End: Original strand, 33281320 - 33281376
Alignment:
Q  792 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 851  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  33281320 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 33281376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 33293034 - 33293078
Alignment:
Q  3 agcagcaacttgcattgcaagatcatgaacaaactccttgaattt 47  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||    
T  33293034 agcagcaacttgcattgcaagatcattaaccaactccttgaattt 33293078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 28873091 - 28873045
Alignment:
Q  164 cagcggatgagagacccttttttctgaggtatgcttgcgccttttca 210  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||    
T  28873091 cagcagatgagagacccttttatctgaggtatgcttacgccttttca 28873045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 809 - 863
Target Start/End: Original strand, 33416538 - 33416592
Alignment:
Q  809 agataagttgttgtttgtctcggatgcaattgcaacttcttcatcttcaacttgt 863  Q
    |||||||||| ||||||| || ||||||||||||||  |||||||||||||||||    
T  33416538 agataagttgctgtttgtttcagatgcaattgcaaccgcttcatcttcaacttgt 33416592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 792 - 851
Target Start/End: Original strand, 33301947 - 33302003
Alignment:
Q  792 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 851  Q
    ||||||||||||||||||||||   || ||||||||||||||||||| ||||| ||||||    
T  33301947 gtttgtccattagaattagata---tgatgtttgtctcggatgcaatagcaacctcttca 33302003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 473 - 548
Target Start/End: Complemental strand, 281881 - 281808
Alignment:
Q  473 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagt 548  Q
    |||||||||||||||||||||| |   ||||||||||  |||| |||||||| |||| | ||||||||||||||||    
T  281881 ggaaataagctgaaaacaacttata--gacatgtcataagttgcttccattagctctcccaaacagtctcacaagt 281808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 33282241 - 33282282
Alignment:
Q  258 gacatttaaaaattacaaaccttatgtaagaattcaaagata 299  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33282241 gacatttaaaaattagaaatcttatgtaagaattcaacgata 33282282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 33398042 - 33398083
Alignment:
Q  258 gacatttaaaaattacaaaccttatgtaagaattcaaagata 299  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33398042 gacatttaaaaattataaatcttatgtaagaattcaacgata 33398083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 33408952 - 33408993
Alignment:
Q  258 gacatttaaaaattacaaaccttatgtaagaattcaaagata 299  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  33408952 gacatttaaaaattataaatcttatgtaagaattcaacgata 33408993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 6e-55; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 17447969 - 17447760
Alignment:
Q  2 aagcagcaacttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaat 101  Q
    ||||||| ||||||||||||||||||| ||| |||||||||||| |||| ||||| || | |||||| |||||| | |||| |||||||||| |||  ||    
T  17447969 aagcagccacttgcattgcaagatcatcaaccaactccttgaatctctcccttctgccaacaaagtcggtttcaaagttcaattcaattagaccaccgat 17447870  T
Q  102 gtgtgaatcgtgaatgtatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagaga-cccttttttctgaggtatgcttg 200  Q
    | ||| |||||||||||||||| ||||||||||||||||  |  |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  17447869 gcgtgcatcgtgaatgtatgtaccgattcttccttcagctgccagtcttccggatttcttatcagcggatgagagaccccttttttctgaggtatgcttg 17447770  T
Q  201 cgccttttca 210  Q
    ||||||||||    
T  17447769 cgccttttca 17447760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 734 - 863
Target Start/End: Complemental strand, 17443503 - 17443374
Alignment:
Q  734 agcaaataagatgaaattgaaaccattactcgagcctttgtctgaagaagtaatgccggtttgtccattagaattagataagttgttgtttgtctcggat 833  Q
    ||||||||||||||||||| |||| ||  || ||||||  |||||||  ||||||| ||||||||||||||| ||||||| |   |||||||| ||  ||    
T  17443503 agcaaataagatgaaattgcaacctttggtcaagccttcatctgaagctgtaatgctggtttgtccattagagttagatacgccattgtttgtttcaaat 17443404  T
Q  834 gcaattgcaacttcttcatcttcaacttgt 863  Q
    ||||||||||||||||||  ||||||||||    
T  17443403 gcaattgcaacttcttcacgttcaacttgt 17443374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 514 - 579
Target Start/End: Complemental strand, 17443602 - 17443537
Alignment:
Q  514 tgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaaatacatc 579  Q
    ||||||||| |||||||| ||||||||||||||||||| |||| | | ||||||||||||||||||    
T  17443602 tgtttccataaactcttccaaacagtctcacaagtgcttatatcagtatataagttcaaatacatc 17443537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 361 - 442
Target Start/End: Original strand, 34339039 - 34339122
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 442  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||  |||||||||| |||||| ||||||||| |||||||    
T  34339039 ataaacacttatcatataagtgcttatgtataaactttttctatagctaaagataaaataaagtcagactgttttcgtataagc 34339122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 369 - 409
Target Start/End: Original strand, 3102617 - 3102657
Alignment:
Q  369 ttatcataaaattgcttatgtataagctatttttatagcaa 409  Q
    |||||||| || |||||||||||||||||||||||||||||    
T  3102617 ttatcatataactgcttatgtataagctatttttatagcaa 3102657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 551
Target Start/End: Complemental strand, 14299663 - 14299588
Alignment:
Q  474 gaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 551  Q
    ||||||||||||||||||  | | |||| |||||||  ||||||||||| |||||||| |||||||| | ||||||||    
T  14299663 gaaataagctgaaaacaa--tgtatggatatgtcataagttgtttccataaactcttccaaacagtccctcaagtgct 14299588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 7103615 - 7103554
Alignment:
Q  381 tgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagc 442  Q
    |||||||||| || |||| |||||| ||||||||||| |||||| ||||||||  |||||||    
T  7103615 tgcttatgtagaaactatatttataacaagataaaataaagtcaaactgttttaatataagc 7103554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 10 - 210
Target Start/End: Original strand, 2336 - 2537
Alignment:
Q  10 acttgcattgcaagatcatgaacaaactccttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaat 109  Q
    ||||||||||||||||| | ||| |||||||| |||||||||||||| || | |||||| |||||||  ||||||||||||||||||| |||||||||||    
T  2336 acttgcattgcaagatcgtcaaccaactccttaaatttctcacttctgccaacaaagtcggtttcaccgttcacttcaattagaacaccaatgtgtgaat 2435  T
Q  110 cgtgaatg-tatgtagcgattcttccttcagcaactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgcctttt 208  Q
    || || || |||||| |||||||||||||  |  || |||| ||||||||||| |||||||||||||||||||||||  |||| |||||||||| |||||    
T  2436 cgcgagtgatatgtaccgattcttccttcttctgctagtctcccggatttcttatcagcggatgagagaccctttttgatgagatatgcttgcggctttt 2535  T
Q  209 ca 210  Q
    ||    
T  2536 ca 2537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 343 - 579
Target Start/End: Original strand, 3802 - 4047
Alignment:
Q  343 ctaattaaagcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctata- 439  Q
    |||||| ||||||| ||||||| | |||  |||| || ||||||||| ||||||||||||||| |||  |||||| |||||||||||||||||||||||     
T  3802 ctaattcaagcttataagataagcgctttacatataagtgcttatgtgtaagctatttttataacaaaagataaactgaagtcatactgttttcctatat 3901  T
Q  440 ------agcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcga 533  Q
          ||| |||||||||||||||||||||||  ||| | |||   |||||||||| ||||| ||||||||||||  |  |||||||| |||||||| |    
T  3902 gctataagctattttcataagcttttctagacagtatatgtaaaatggctgaaaacagcttttatggacatgtcatgagccgtttccataaactcttcca 4001  T
Q  534 aacagtctcacaagtgctaatatgactgtataagttcaaatacatc 579  Q
    |||||||||||||||||| |||| | | ||||||||||||||||||    
T  4002 aacagtctcacaagtgcttatatcaatatataagttcaaatacatc 4047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 40 - 212
Target Start/End: Complemental strand, 15281 - 15114
Alignment:
Q  40 ttgaatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcag 139  Q
    |||||||||| |||||| ||   |||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||    
T  15281 ttgaatttctaacttctgccatcaaagtcggtttcacagttaacttcaattagaacactgatgtgtgaatcgtgaatgtatgtaccaattcttcctttag 15182  T
Q  140 caactcgtcttccggatttcttgtcagcggatgagagacccttttttctgaggtatgcttgcgccttttcatg 212  Q
     | ||    | ||||||||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||    
T  15181 tagct----tgccggatttcttgtcagctgataagagaccc-tttttctaaggtatgcttgcgccttttcatg 15114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 13895 - 13771
Alignment:
Q  43 aatttctcacttctaccgataaagtccgtttcacatttcacttcaattagaacactaatgtgtgaatcgtgaatgtatgtagcgattcttccttcagcaa 142  Q
    |||||||||||||| || | |||||| || ||||| || ||||||| ||||| || |||| |||||||||||||||| |||  ||||| |||||||||      
T  13895 aatttctcacttctgccaaaaaagtcagtatcacagttaacttcaaatagaaaaccaatgcgtgaatcgtgaatgtaggtactgattcctccttcagctt 13796  T
Q  143 ctcgtcttccggatttcttgtcagc 167  Q
     |  |||||||||||||||||||||    
T  13795 ttaatcttccggatttcttgtcagc 13771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 3704 - 3791
Alignment:
Q  213 caagtgttggtgatatagttgctgcaattcaaaggg-gacagaatagacatttaaaaattacaaaccttatgtaagaattcaaagata 299  Q
    |||||| ||||||||||||||||||||| ||||||| | | ||| |||||||||| || || ||| ||||||||||||||||||||||    
T  3704 caagtgctggtgatatagttgctgcaatccaaagggcggcggaacagacatttaacaactataaatcttatgtaagaattcaaagata 3791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 792 - 851
Target Start/End: Complemental strand, 12932 - 12876
Alignment:
Q  792 gtttgtccattagaattagataagttgttgtttgtctcggatgcaattgcaacttcttca 851  Q
    ||||||||||||||||||||||   || ||||||||||||||||||||||||| ||||||    
T  12932 gtttgtccattagaattagata---tgctgtttgtctcggatgcaattgcaacctcttca 12876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 12011 - 11970
Alignment:
Q  258 gacatttaaaaattacaaaccttatgtaagaattcaaagata 299  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||    
T  12011 gacatttaaaaattagaaatcttatgtaagaattcaacgata 11970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 5e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 617 - 771
Target Start/End: Complemental strand, 30653360 - 30653203
Alignment:
Q  617 aaatggaagtataattcattttttctcttttacatgtaaaaattgaaatacatgtataaattcaaatctgtctaacatatttacttctattagatgtaga 716  Q
    |||||||||||||||| |||||||||||||||||||||||||  |||| |||||||||| ||||||||||||||||||| |||||| | |||||||| ||    
T  30653360 aaatggaagtataatttattttttctcttttacatgtaaaaaccgaaagacatgtataagttcaaatctgtctaacataattactt-tgttagatgttga 30653262  T
Q  717 aaaattagaatagaaaca----gcaaataagatgaaattgaaaccattactcgagcctt 771  Q
    ||||||||||||||||||    |||||||||||||||||  |||| |||||||||||||    
T  30653261 aaaattagaatagaaacatgacgcaaataagatgaaattttaacctttactcgagcctt 30653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 368 - 490
Target Start/End: Original strand, 11684346 - 11684468
Alignment:
Q  368 cttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaa 467  Q
    ||||||||| || |||| |||||||||||||||||||| ||| ||| ||   ||| | ||||||||| ||||||| ||||||||||||| | || || |     
T  11684346 cttatcatataagtgctaatgtataagctatttttataacaaaatataaaatagtgaaactgttttcatataagctattttcataagctatgctggagag 11684445  T
Q  468 catacggaaataagctgaaaaca 490  Q
    | |||||||||||| ||||||||    
T  11684446 cttacggaaataagttgaaaaca 11684468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 444 - 509
Target Start/End: Complemental strand, 30653438 - 30653373
Alignment:
Q  444 attttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcat 509  Q
    ||||||||||||||||||||||| | || |||||||||||||||||| ||||| || |||||||||    
T  30653438 attttcataagcttttctagacagcttatggaaataagctgaaaacagcttttatgaacatgtcat 30653373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 361 - 442
Target Start/End: Complemental strand, 32059742 - 32059660
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctatttttatagc-aagataaaatgaagtcatactgttttcctataagc 442  Q
    ||||| |||||||||| || |||||||||||||||| ||||| || | |||||||||| |||||| ||||||||| |||||||    
T  32059742 ataaatacttatcatataagtgcttatgtataagctgtttttgtaactaagataaaataaagtcaaactgttttcatataagc 32059660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 405
Target Start/End: Original strand, 10391269 - 10391313
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctatttttata 405  Q
    |||||||||||||||| || |||||| ||||||||||||||||||    
T  10391269 ataaacacttatcatataagtgcttacgtataagctatttttata 10391313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 549
Target Start/End: Original strand, 11457158 - 11457209
Alignment:
Q  498 tggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 549  Q
    ||||||||||||  ||||||||||| | |||||| |||||||||||||||||    
T  11457158 tggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtg 11457209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 400
Target Start/End: Complemental strand, 29115367 - 29115328
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctattt 400  Q
    ||||||| ||||||||||| ||||||||||||||||||||    
T  29115367 ataaacatttatcataaaagtgcttatgtataagctattt 29115328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 473 - 551
Target Start/End: Complemental strand, 13000457 - 13000381
Alignment:
Q  473 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 551  Q
    ||||||||||||||||||||||  |||||||||||||  |||||| |||| |||||||  ||| |||||||||||||||    
T  13000457 ggaaataagctgaaaacaactt--gtggacatgtcataagttgttaccataaactcttgcaaatagtctcacaagtgct 13000381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 366 - 434
Target Start/End: Original strand, 26717178 - 26717246
Alignment:
Q  366 cacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttc 434  Q
    ||||||||||| || ||||| || |||||||| ||||||| ||||||||||| |||||| ||| |||||    
T  26717178 cacttatcatataagtgcttctgaataagctaattttataacaagataaaataaagtcaaactattttc 26717246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 370 - 456
Target Start/End: Original strand, 5290566 - 5290649
Alignment:
Q  370 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataagct 456  Q
    ||||||| || |||||||||||||||||||| |||| ||| |||||||  ||||| ||||||||| | ||||| || ||||||||||    
T  5290566 tatcatacaagtgcttatgtataagctatttctataacaa-ataaaat--agtcaaactgttttcatgtaagctatattcataagct 5290649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 361 - 424
Target Start/End: Complemental strand, 26716590 - 26716527
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 424  Q
    |||||||||||| ||| || ||||||||||||||||| || |||| |||||| |||| ||||||    
T  26716590 ataaacacttattatataagtgcttatgtataagctacttctataacaagattaaataaagtca 26716527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 551
Target Start/End: Complemental strand, 30191174 - 30191098
Alignment:
Q  473 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 551  Q
    ||||||||||||||||||| |||||   |||||||||  ||||||||||| | |||| | ||||||||| |||||||||    
T  30191174 ggaaataagctgaaaacaagttttga--acatgtcataagttgtttccataagctctcccaaacagtctaacaagtgct 30191098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 408 - 494
Target Start/End: Complemental strand, 10079168 - 10079082
Alignment:
Q  408 aagataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaactt 494  Q
    ||||||||||||||||| ||||||||| |||||||  ||||||| |||| |||| || |   || ||||| ||||| ||||||||||    
T  10079168 aagataaaatgaagtcaaactgttttcgtataagctgttttcatgagctattctggaaagtttatggaaagaagcttaaaacaactt 10079082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 445 - 494
Target Start/End: Original strand, 30389108 - 30389157
Alignment:
Q  445 ttttcataagcttttctagacaacatacggaaataagctgaaaacaactt 494  Q
    |||||||||||||| ||||| ||| || | ||||||||||||||||||||    
T  30389108 ttttcataagctttcctagagaacttatgaaaataagctgaaaacaactt 30389157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 368 - 442
Target Start/End: Complemental strand, 34788574 - 34788498
Alignment:
Q  368 cttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 442  Q
    ||||||||| || |||||| |||||||||||||||||  |  |||||||||| |||||| ||||||| | |||||||    
T  34788574 cttatcatataaatgcttacgtataagctatttttatgaccaaagataaaataaagtcaaactgtttccatataagc 34788498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 43115093 - 43115167
Alignment:
Q  473 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtg 549  Q
    ||||||||||||||||||| || ||  ||||||||||  ||||||||||| |||||||| ||||| |||||||||||    
T  43115093 ggaaataagctgaaaacaagttatg--gacatgtcataagttgtttccataaactcttccaaacaatctcacaagtg 43115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 361 - 439
Target Start/End: Original strand, 38462197 - 38462277
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctata 439  Q
    |||||||||||||||| || || |||| |||||||||||| |||| |  |||||||||| |||||| ||||||||| ||||    
T  38462197 ataaacacttatcatataagtgtttatttataagctatttctataccaaaagataaaataaagtcaaactgttttcatata 38462277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 368 - 441
Target Start/End: Original strand, 22232749 - 22232824
Alignment:
Q  368 cttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataag 441  Q
    ||||||||| || |||| ||||||||||||||| |||| |||  |||||||| |||||| ||||||||| ||||||    
T  22232749 cttatcatataaatgctcatgtataagctatttatataacaaatgataaaataaagtcaaactgttttcatataag 22232824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 434
Target Start/End: Complemental strand, 3016011 - 3015928
Alignment:
Q  352 gcttacaagataaacacttatcataaaattgcttatgtataagctatttttatagcaa-gataaaatgaagtcatactgttttc 434  Q
    ||||| || |||||||||||| ||| || ||||||||||| |  ||||| |||| ||| ||||||||||||||| |||||||||    
T  3016011 gcttataacataaacacttattatataagtgcttatgtattaattatttctataacaaagataaaatgaagtcaaactgttttc 3015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 473 - 551
Target Start/End: Original strand, 37273171 - 37273247
Alignment:
Q  473 ggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 551  Q
    ||||||||| |||||||||||| ||  ||||||||||  ||||||||||| | |||| | |||||||||||| ||||||    
T  37273171 ggaaataagttgaaaacaacttatg--gacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgct 37273247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 476 - 572
Target Start/End: Original strand, 24624250 - 24624344
Alignment:
Q  476 aataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgctaatatgactgtataagttcaa 572  Q
    |||||||||||||||   ||| ||||||||||||  | ||||| ||| | |||||| ||||||||| |||||||||||| ||| |  ||||||||||    
T  24624250 aataagctgaaaacag--tttatggacatgtcataagctgttttcataagctcttccaaacagtcttacaagtgctaatgtgagtagataagttcaa 24624344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 436 - 549
Target Start/End: Original strand, 3468614 - 3468725
Alignment:
Q  436 tataagcgattttcataagcttttctagacaacatacggaaataagctgaaaacaacttttgtggacatgtcattggttgtttccattaactcttcgaaa 535  Q
    |||||||  ||||||||| || | ||||| ||| |  ||||||||| || ||||||||| ||  ||||||||||| ||||||||||  |||||| |||||    
T  3468614 tataagcttttttcataatctatcctagagaacttgtggaaataagttggaaacaacttatg--gacatgtcattagttgtttccaacaactctccgaaa 3468711  T
Q  536 cagtctcacaagtg 549  Q
    |||||||| |||||    
T  3468712 cagtctcaaaagtg 3468725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 361 - 442
Target Start/End: Complemental strand, 3610894 - 3610811
Alignment:
Q  361 ataaacacttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttcctataagc 442  Q
    |||||||||| ||||| || |||||||||||||||||||| || | |  |||||||||||||| || ||||||||  |||||||    
T  3610894 ataaacacttgtcatataagtgcttatgtataagctatttctacaacaaaagataaaatgaaggcaaactgttttggtataagc 3610811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 369 - 490
Target Start/End: Complemental strand, 26935696 - 26935573
Alignment:
Q  369 ttatcataaaattgcttatgtataagctatttttatagcaa--gataaaatgaagtcatactgttttcctataagcgattttcataagcttttctagaca 466  Q
    |||||||| || ||||| ||| ||||||||||||||| |||  |||||||| | || | | ||||||| ||| ||| |||||||||| || ||||| | |    
T  26935696 ttatcatataagtgcttttgtgtaagctatttttataacaaatgataaaataaggttaaattgttttcatatgagctattttcataatctattctaaaga 26935597  T
Q  467 acatacggaaataagctgaaaaca 490  Q
     | || ||||||||||||||||||    
T  26935596 gcttatggaaataagctgaaaaca 26935573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 405
Target Start/End: Complemental strand, 22388093 - 22388014
Alignment:
Q  327 agtttggataaataacctaattaaa-gcttacaagataaacacttatcataaaattgcttatgtataagctatttttata 405  Q
    |||||||||||| ||| |||||||  ||||| || |||||||||||||||  || |||||||| ||||||||||| ||||    
T  22388093 agtttggataaacaacttaattaagcgcttataacataaacacttatcatttaagtgcttatggataagctatttctata 22388014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 371 - 424
Target Start/End: Original strand, 44207697 - 44207750
Alignment:
Q  371 atcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 424  Q
    |||||| || ||||||| | ||||||||||||||||||||||||||| ||||||    
T  44207697 atcatacaagtgcttatatgtaagctatttttatagcaagataaaataaagtca 44207750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 500 - 551
Target Start/End: Original strand, 15581316 - 15581367
Alignment:
Q  500 gacatgtcattggttgtttccattaactcttcgaaacagtctcacaagtgct 551  Q
    ||||||||||  ||||||||||||| |||||| ||||| |||||||||||||    
T  15581316 gacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgct 15581367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 456
Target Start/End: Complemental strand, 21410 - 21335
Alignment:
Q  383 cttatgtataagctatttttatag--caagataaaatgaagtcatactgttttcctataagcgattttcataagct 456  Q
    ||||||||||||||||||||||||   |||||||||| |||| | | ||||||| |||||||  ||||||||||||    
T  21410 cttatgtataagctatttttataggaaaagataaaataaagttaaattgttttcgtataagctgttttcataagct 21335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 370 - 424
Target Start/End: Complemental strand, 32920543 - 32920489
Alignment:
Q  370 tatcataaaattgcttatgtataagctatttttatagcaagataaaatgaagtca 424  Q
    ||||||| || || ||||| |||||||||||||||| ||||||||||| ||||||    
T  32920543 tatcatataagtgtttatggataagctatttttataacaagataaaataaagtca 32920489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 367 - 434
Target Start/End: Original strand, 47970240 - 47970309
Alignment:
Q  367 acttatcataaaattgcttatgtataagctatttttatagc--aagataaaatgaagtcatactgttttc 434  Q
    |||| ||||| || |||||||||||||||||||| |||| |  ||||||||||||||||| ||| |||||    
T  47970240 acttgtcatataagtgcttatgtataagctatttctataacaaaagataaaatgaagtcaaactattttc 47970309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 384 - 454
Target Start/End: Complemental strand, 55437415 - 55437345
Alignment:
Q  384 ttatgtataagctatttttatagcaagataaaatgaagtcatactgttttcctataagcgattttcataag 454  Q
    |||| |||||||||||| |||| ||| ||||||| |||||| | | ||||| ||||||| |||||||||||    
T  55437415 ttatctataagctatttctataacaatataaaataaagtcaaattattttcatataagctattttcataag 55437345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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